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ZNF10 (zinc finger protein 10)

Identity

Alias_nameszinc finger protein 10 (KOX 1)
Alias_symbol (synonym)KOX1
Other alias
HGNC (Hugo) ZNF10
LocusID (NCBI) 7556
Atlas_Id 42869
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 133130628 and ends at 133159463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LRRC6 (8q24.22) / ZNF10 (12q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF10   12879
Cards
Entrez_Gene (NCBI)ZNF10  7556  zinc finger protein 10
AliasesKOX1
GeneCards (Weizmann)ZNF10
Ensembl hg19 (Hinxton)ENSG00000256223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256223 [Gene_View]  ENSG00000256223 [Sequence]  chr12:133130628-133159463 [Contig_View]  ZNF10 [Vega]
ICGC DataPortalENSG00000256223
TCGA cBioPortalZNF10
AceView (NCBI)ZNF10
Genatlas (Paris)ZNF10
WikiGenes7556
SOURCE (Princeton)ZNF10
Genetics Home Reference (NIH)ZNF10
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF10  -     chr12:133130628-133159463 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF10  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblZNF10 - 12q24.33 [CytoView hg19]  ZNF10 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIZNF10 [Mapview hg19]  ZNF10 [Mapview hg38]
OMIM194538   
Gene and transcription
Genbank (Entrez)AI972895 AK314784 AL110188 BC024182 BE895826
RefSeq transcript (Entrez)NM_015394
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF10
Cluster EST : UnigeneHs.573983 [ NCBI ]
CGAP (NCI)Hs.573983
Alternative Splicing GalleryENSG00000256223
Gene ExpressionZNF10 [ NCBI-GEO ]   ZNF10 [ EBI - ARRAY_EXPRESS ]   ZNF10 [ SEEK ]   ZNF10 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7556
GTEX Portal (Tissue expression)ZNF10
Human Protein AtlasENSG00000256223-ZNF10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP21506   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP21506  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP21506
Splice isoforms : SwissVarP21506
PhosPhoSitePlusP21506
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF10
DMDM Disease mutations7556
Blocks (Seattle)ZNF10
SuperfamilyP21506
Human Protein Atlas [tissue]ENSG00000256223-ZNF10 [tissue]
Peptide AtlasP21506
HPRD01923
IPIIPI00009267   IPI00982501   IPI00795749   IPI00985295   IPI00976133   IPI01008717   IPI01011808   IPI01012393   IPI01009589   IPI01010368   IPI00796989   IPI01015173   
Protein Interaction databases
DIP (DOE-UCLA)P21506
IntAct (EBI)P21506
FunCoupENSG00000256223
BioGRIDZNF10
STRING (EMBL)ZNF10
ZODIACZNF10
Ontologies - Pathways
QuickGOP21506
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF10
Atlas of Cancer Signalling NetworkZNF10
Wikipedia pathwaysZNF10
Orthology - Evolution
OrthoDB7556
GeneTree (enSembl)ENSG00000256223
Phylogenetic Trees/Animal Genes : TreeFamZNF10
HOVERGENP21506
HOGENOMP21506
Homologs : HomoloGeneZNF10
Homology/Alignments : Family Browser (UCSC)ZNF10
Gene fusions - Rearrangements
Fusion : QuiverZNF10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF10
dbVarZNF10
ClinVarZNF10
1000_GenomesZNF10 
Exome Variant ServerZNF10
ExAC (Exome Aggregation Consortium)ENSG00000256223
GNOMAD BrowserENSG00000256223
Varsome BrowserZNF10
Genetic variants : HAPMAP7556
Genomic Variants (DGV)ZNF10 [DGVbeta]
DECIPHERZNF10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF10 
Mutations
ICGC Data PortalZNF10 
TCGA Data PortalZNF10 
Broad Tumor PortalZNF10
OASIS PortalZNF10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF10
DgiDB (Drug Gene Interaction Database)ZNF10
DoCM (Curated mutations)ZNF10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF10 (select a term)
intoGenZNF10
Cancer3DZNF10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194538   
Orphanet
DisGeNETZNF10
MedgenZNF10
Genetic Testing Registry ZNF10
NextProtP21506 [Medical]
TSGene7556
GENETestsZNF10
Target ValidationZNF10
Huge Navigator ZNF10 [HugePedia]
snp3D : Map Gene to Disease7556
BioCentury BCIQZNF10
ClinGenZNF10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7556
Chemical/Pharm GKB GenePA37468
Clinical trialZNF10
Miscellaneous
canSAR (ICR)ZNF10 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF10
EVEXZNF10
GoPubMedZNF10
iHOPZNF10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:51:12 CET 2018

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