Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF100 (zinc finger protein 100)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNF100
HGNC Previous namezinc finger protein 100 (Y1)
LocusID (NCBI) 163227
Atlas_Id 75982
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 21722771 and ends at 21767579 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ELL (19p13.11) / ZNF100 (19p12)ZNF100 (19p12) / GIPC1 (19p13.12)ZNF100 (19p12) / XPO1 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF100   12880
Cards
Entrez_Gene (NCBI)ZNF100    zinc finger protein 100
Aliases
GeneCards (Weizmann)ZNF100
Ensembl hg19 (Hinxton)ENSG00000197020 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197020 [Gene_View]  ENSG00000197020 [Sequence]  chr19:21722771-21767579 [Contig_View]  ZNF100 [Vega]
ICGC DataPortalENSG00000197020
TCGA cBioPortalZNF100
AceView (NCBI)ZNF100
Genatlas (Paris)ZNF100
SOURCE (Princeton)ZNF100
Genetics Home Reference (NIH)ZNF100
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF100  -     chr19:21722771-21767579 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF100  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF100 - 19p12 [CytoView hg19]  ZNF100 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000197020
Genome Data Viewer NCBIZNF100 [Mapview hg19]  
OMIM603982   
Gene and transcription
Genbank (Entrez)AK126551 AK308798 BC031248 BC035579 BX640982
RefSeq transcript (Entrez)NM_001351669 NM_001351670 NM_001351671 NM_001351672 NM_173531
Consensus coding sequences : CCDS (NCBI)ZNF100
Gene ExpressionZNF100 [ NCBI-GEO ]   ZNF100 [ EBI - ARRAY_EXPRESS ]   ZNF100 [ SEEK ]   ZNF100 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF100 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF100 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163227
GTEX Portal (Tissue expression)ZNF100
Human Protein AtlasENSG00000197020-ZNF100 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYN0
PhosPhoSitePlusQ8IYN0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF100
SuperfamilyQ8IYN0
AlphaFold pdb e-kbQ8IYN0   
Human Protein Atlas [tissue]ENSG00000197020-ZNF100 [tissue]
HPRD10359
Protein Interaction databases
DIP (DOE-UCLA)Q8IYN0
IntAct (EBI)Q8IYN0
BioGRIDZNF100
STRING (EMBL)ZNF100
ZODIACZNF100
Ontologies - Pathways
QuickGOQ8IYN0
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF100
Atlas of Cancer Signalling NetworkZNF100
Wikipedia pathwaysZNF100
Orthology - Evolution
OrthoDB163227
GeneTree (enSembl)ENSG00000197020
Phylogenetic Trees/Animal Genes : TreeFamZNF100
Homologs : HomoloGeneZNF100
Homology/Alignments : Family Browser (UCSC)ZNF100
Gene fusions - Rearrangements
Fusion : QuiverZNF100
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF100 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF100
dbVarZNF100
ClinVarZNF100
MonarchZNF100
1000_GenomesZNF100 
Exome Variant ServerZNF100
GNOMAD BrowserENSG00000197020
Varsome BrowserZNF100
ACMGZNF100 variants
VarityQ8IYN0
Genomic Variants (DGV)ZNF100 [DGVbeta]
DECIPHERZNF100 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF100 
Mutations
ICGC Data PortalZNF100 
TCGA Data PortalZNF100 
Broad Tumor PortalZNF100
OASIS PortalZNF100 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF100  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF100
Mutations and Diseases : HGMDZNF100
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF100
DgiDB (Drug Gene Interaction Database)ZNF100
DoCM (Curated mutations)ZNF100
CIViC (Clinical Interpretations of Variants in Cancer)ZNF100
Cancer3DZNF100
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603982   
Orphanet
DisGeNETZNF100
MedgenZNF100
Genetic Testing Registry ZNF100
NextProtQ8IYN0 [Medical]
GENETestsZNF100
Target ValidationZNF100
Huge Navigator ZNF100 [HugePedia]
ClinGenZNF100
Clinical trials, drugs, therapy
MyCancerGenomeZNF100
Protein Interactions : CTDZNF100
Pharm GKB GenePA37469
PharosQ8IYN0
Clinical trialZNF100
Miscellaneous
canSAR (ICR)ZNF100
HarmonizomeZNF100
DataMed IndexZNF100
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:11 CEST 2021

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