Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF100 (zinc finger protein 100)

Identity

Alias_nameszinc finger protein 100 (Y1)
Other alias-
HGNC (Hugo) ZNF100
LocusID (NCBI) 163227
Atlas_Id 75982
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 21724041 and ends at 21767628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ELL (19p13.11) / ZNF100 (19p12)ZNF100 (19p12) / GIPC1 (19p13.12)ZNF100 (19p12) / XPO1 (2p15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF100   12880
Cards
Entrez_Gene (NCBI)ZNF100  163227  zinc finger protein 100
Aliases
GeneCards (Weizmann)ZNF100
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:21724041-21767628 [Contig_View]  ZNF100 [Vega]
TCGA cBioPortalZNF100
AceView (NCBI)ZNF100
Genatlas (Paris)ZNF100
WikiGenes163227
SOURCE (Princeton)ZNF100
Genetics Home Reference (NIH)ZNF100
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF100  -     chr19:21724041-21767628 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF100  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF100 - 19p12 [CytoView hg19]  ZNF100 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF100 [Mapview hg19]  ZNF100 [Mapview hg38]
OMIM603982   
Gene and transcription
Genbank (Entrez)AK126551 AK308798 BC031248 BC035579 BX640982
RefSeq transcript (Entrez)NM_173531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF100
Cluster EST : UnigeneHs.365142 [ NCBI ]
CGAP (NCI)Hs.365142
Gene ExpressionZNF100 [ NCBI-GEO ]   ZNF100 [ EBI - ARRAY_EXPRESS ]   ZNF100 [ SEEK ]   ZNF100 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF100 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163227
GTEX Portal (Tissue expression)ZNF100
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IYN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IYN0
Splice isoforms : SwissVarQ8IYN0
PhosPhoSitePlusQ8IYN0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF100
DMDM Disease mutations163227
Blocks (Seattle)ZNF100
SuperfamilyQ8IYN0
Peptide AtlasQ8IYN0
HPRD10359
IPIIPI00217809   IPI00644776   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYN0
IntAct (EBI)Q8IYN0
BioGRIDZNF100
STRING (EMBL)ZNF100
ZODIACZNF100
Ontologies - Pathways
QuickGOQ8IYN0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF100
Atlas of Cancer Signalling NetworkZNF100
Wikipedia pathwaysZNF100
Orthology - Evolution
OrthoDB163227
Phylogenetic Trees/Animal Genes : TreeFamZNF100
HOVERGENQ8IYN0
HOGENOMQ8IYN0
Homologs : HomoloGeneZNF100
Homology/Alignments : Family Browser (UCSC)ZNF100
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF100 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF100
dbVarZNF100
ClinVarZNF100
1000_GenomesZNF100 
Exome Variant ServerZNF100
ExAC (Exome Aggregation Consortium)ZNF100 (select the gene name)
Genetic variants : HAPMAP163227
Genomic Variants (DGV)ZNF100 [DGVbeta]
DECIPHERZNF100 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF100 
Mutations
ICGC Data PortalZNF100 
TCGA Data PortalZNF100 
Broad Tumor PortalZNF100
OASIS PortalZNF100 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF100  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF100
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF100
DgiDB (Drug Gene Interaction Database)ZNF100
DoCM (Curated mutations)ZNF100 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF100 (select a term)
intoGenZNF100
Cancer3DZNF100(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603982   
Orphanet
MedgenZNF100
Genetic Testing Registry ZNF100
NextProtQ8IYN0 [Medical]
TSGene163227
GENETestsZNF100
Target ValidationZNF100
Huge Navigator ZNF100 [HugePedia]
snp3D : Map Gene to Disease163227
BioCentury BCIQZNF100
ClinGenZNF100
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163227
Chemical/Pharm GKB GenePA37469
Clinical trialZNF100
Miscellaneous
canSAR (ICR)ZNF100 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF100
EVEXZNF100
GoPubMedZNF100
iHOPZNF100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:51 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.