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ZNF106 (zinc finger protein 106)

Identity

Alias_namesZFP106
zinc finger protein 106 homolog (mouse)
Alias_symbol (synonym)ZNF474
SH3BP3
Other alias
HGNC (Hugo) ZNF106
LocusID (NCBI) 64397
Atlas_Id 75984
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 42412437 and ends at 42457567 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TNPO1 (5q13.2) / ZNF106 (15q15.1)ZNF106 (15q15.1) / SVIL (10p11.23)ZNF106 (15q15.1) / TMEM131 (2q11.2)
ZNF106 (15q15.1) / TNPO1 (5q13.2)ZNF106 (15q15.1) / ZNF106 (15q15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF106   12886
Cards
Entrez_Gene (NCBI)ZNF106  64397  zinc finger protein 106
AliasesSH3BP3; ZFP106; ZNF474
GeneCards (Weizmann)ZNF106
Ensembl hg19 (Hinxton)ENSG00000103994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103994 [Gene_View]  chr15:42412437-42457567 [Contig_View]  ZNF106 [Vega]
ICGC DataPortalENSG00000103994
TCGA cBioPortalZNF106
AceView (NCBI)ZNF106
Genatlas (Paris)ZNF106
WikiGenes64397
SOURCE (Princeton)ZNF106
Genetics Home Reference (NIH)ZNF106
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF106  -     chr15:42412437-42457567 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF106  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblZNF106 - 15q15.1 [CytoView hg19]  ZNF106 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIZNF106 [Mapview hg19]  ZNF106 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF205632 AI658947 AK024726 AK055517 AK057410
RefSeq transcript (Entrez)NM_001284306 NM_001284307 NM_022473
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF106
Cluster EST : UnigeneHs.735946 [ NCBI ]
CGAP (NCI)Hs.735946
Alternative Splicing GalleryENSG00000103994
Gene ExpressionZNF106 [ NCBI-GEO ]   ZNF106 [ EBI - ARRAY_EXPRESS ]   ZNF106 [ SEEK ]   ZNF106 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF106 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64397
GTEX Portal (Tissue expression)ZNF106
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2Y7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2Y7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2Y7
Splice isoforms : SwissVarQ9H2Y7
PhosPhoSitePlusQ9H2Y7
Domaine pattern : Prosite (Expaxy)WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF106
DMDM Disease mutations64397
Blocks (Seattle)ZNF106
SuperfamilyQ9H2Y7
Human Protein AtlasENSG00000103994
Peptide AtlasQ9H2Y7
HPRD10317
IPIIPI00782966   IPI00383996   IPI01018771   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2Y7
IntAct (EBI)Q9H2Y7
FunCoupENSG00000103994
BioGRIDZNF106
STRING (EMBL)ZNF106
ZODIACZNF106
Ontologies - Pathways
QuickGOQ9H2Y7
Ontology : AmiGORNA binding  nucleolus  cytosol  insulin receptor signaling pathway  membrane  SH3 domain binding  metal ion binding  
Ontology : EGO-EBIRNA binding  nucleolus  cytosol  insulin receptor signaling pathway  membrane  SH3 domain binding  metal ion binding  
NDEx NetworkZNF106
Atlas of Cancer Signalling NetworkZNF106
Wikipedia pathwaysZNF106
Orthology - Evolution
OrthoDB64397
GeneTree (enSembl)ENSG00000103994
Phylogenetic Trees/Animal Genes : TreeFamZNF106
HOVERGENQ9H2Y7
HOGENOMQ9H2Y7
Homologs : HomoloGeneZNF106
Homology/Alignments : Family Browser (UCSC)ZNF106
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF106 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF106
dbVarZNF106
ClinVarZNF106
1000_GenomesZNF106 
Exome Variant ServerZNF106
ExAC (Exome Aggregation Consortium)ZNF106 (select the gene name)
Genetic variants : HAPMAP64397
Genomic Variants (DGV)ZNF106 [DGVbeta]
DECIPHERZNF106 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF106 
Mutations
ICGC Data PortalZNF106 
TCGA Data PortalZNF106 
Broad Tumor PortalZNF106
OASIS PortalZNF106 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF106
BioMutasearch ZNF106
DgiDB (Drug Gene Interaction Database)ZNF106
DoCM (Curated mutations)ZNF106 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF106 (select a term)
intoGenZNF106
Cancer3DZNF106(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF106
Genetic Testing Registry ZNF106
NextProtQ9H2Y7 [Medical]
TSGene64397
GENETestsZNF106
Target ValidationZNF106
Huge Navigator ZNF106 [HugePedia]
snp3D : Map Gene to Disease64397
BioCentury BCIQZNF106
ClinGenZNF106
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64397
Chemical/Pharm GKB GenePA166048944
Clinical trialZNF106
Miscellaneous
canSAR (ICR)ZNF106 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF106
EVEXZNF106
GoPubMedZNF106
iHOPZNF106
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:52 CEST 2017

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