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ZNF107 (zinc finger protein 107)

Identity

Alias_namesZNF588
zinc finger protein 588
zinc finger protein 107 (Y8)
Alias_symbol (synonym)ZFD25
smap-7
HGNC (Hugo) ZNF107
LocusID (NCBI) 51427
Atlas_Id 75985
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64126461 and ends at 64171960 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF107 (7q11.21) / DDX39B (6p21.33)ZNF107 (7q11.21) / FAM83D (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF107   12887
Cards
Entrez_Gene (NCBI)ZNF107  51427  zinc finger protein 107
AliasesY8; ZFD25; ZNF588; smap-7
GeneCards (Weizmann)ZNF107
Ensembl hg19 (Hinxton)ENSG00000196247 [Gene_View]  chr7:64126461-64171960 [Contig_View]  ZNF107 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196247 [Gene_View]  chr7:64126461-64171960 [Contig_View]  ZNF107 [Vega]
ICGC DataPortalENSG00000196247
TCGA cBioPortalZNF107
AceView (NCBI)ZNF107
Genatlas (Paris)ZNF107
WikiGenes51427
SOURCE (Princeton)ZNF107
Genetics Home Reference (NIH)ZNF107
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF107  -     chr7:64126461-64171960 +  7q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF107  -     7q11.21   [Description]    (hg38-Dec_2013)
EnsemblZNF107 - 7q11.21 [CytoView hg19]  ZNF107 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF107 [Mapview hg19]  ZNF107 [Mapview hg38]
OMIM603989   
Gene and transcription
Genbank (Entrez)AB014735 AB027251 AK303931 BC017809 BC047243
RefSeq transcript (Entrez)NM_001013746 NM_001282359 NM_001282360 NM_016220
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ZNF107
Cluster EST : UnigeneHs.732661 [ NCBI ]
CGAP (NCI)Hs.732661
Alternative Splicing GalleryENSG00000196247
Gene ExpressionZNF107 [ NCBI-GEO ]   ZNF107 [ EBI - ARRAY_EXPRESS ]   ZNF107 [ SEEK ]   ZNF107 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51427
GTEX Portal (Tissue expression)ZNF107
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UII5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UII5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UII5
Splice isoforms : SwissVarQ9UII5
PhosPhoSitePlusQ9UII5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF107
DMDM Disease mutations51427
Blocks (Seattle)ZNF107
SuperfamilyQ9UII5
Human Protein AtlasENSG00000196247
Peptide AtlasQ9UII5
HPRD18669
IPIIPI00008208   IPI00936311   
Protein Interaction databases
DIP (DOE-UCLA)Q9UII5
IntAct (EBI)Q9UII5
FunCoupENSG00000196247
BioGRIDZNF107
STRING (EMBL)ZNF107
ZODIACZNF107
Ontologies - Pathways
QuickGOQ9UII5
Ontology : AmiGOmolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF107
Atlas of Cancer Signalling NetworkZNF107
Wikipedia pathwaysZNF107
Orthology - Evolution
OrthoDB51427
GeneTree (enSembl)ENSG00000196247
Phylogenetic Trees/Animal Genes : TreeFamZNF107
HOVERGENQ9UII5
HOGENOMQ9UII5
Homologs : HomoloGeneZNF107
Homology/Alignments : Family Browser (UCSC)ZNF107
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF107
dbVarZNF107
ClinVarZNF107
1000_GenomesZNF107 
Exome Variant ServerZNF107
ExAC (Exome Aggregation Consortium)ZNF107 (select the gene name)
Genetic variants : HAPMAP51427
Genomic Variants (DGV)ZNF107 [DGVbeta]
DECIPHER (Syndromes)7:64126461-64171960  ENSG00000196247
CONAN: Copy Number AnalysisZNF107 
Mutations
ICGC Data PortalZNF107 
TCGA Data PortalZNF107 
Broad Tumor PortalZNF107
OASIS PortalZNF107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF107  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF107
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF107
DgiDB (Drug Gene Interaction Database)ZNF107
DoCM (Curated mutations)ZNF107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF107 (select a term)
intoGenZNF107
Cancer3DZNF107(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603989   
Orphanet
MedgenZNF107
Genetic Testing Registry ZNF107
NextProtQ9UII5 [Medical]
TSGene51427
GENETestsZNF107
Huge Navigator ZNF107 [HugePedia]
snp3D : Map Gene to Disease51427
BioCentury BCIQZNF107
ClinGenZNF107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51427
Chemical/Pharm GKB GenePA37476
Clinical trialZNF107
Miscellaneous
canSAR (ICR)ZNF107 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF107
EVEXZNF107
GoPubMedZNF107
iHOPZNF107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Dec 29 13:55:30 CET 2016

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