Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF12 (zinc finger protein 12)

Identity

Alias_namesZNF325
zinc finger protein 325
Alias_symbol (synonym)KOX3
GIOT-3
Other aliasHZF11
HGNC (Hugo) ZNF12
LocusID (NCBI) 7559
Atlas_Id 75989
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6688434 and ends at 6706935 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF12 (7p22.1) / CBX3 (7p15.2)ZNF12 (7p22.1) / ZNF12 (7p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF12   12902
Cards
Entrez_Gene (NCBI)ZNF12  7559  zinc finger protein 12
AliasesGIOT-3; HZF11; KOX3; ZNF325
GeneCards (Weizmann)ZNF12
Ensembl hg19 (Hinxton)ENSG00000164631 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164631 [Gene_View]  chr7:6688434-6706935 [Contig_View]  ZNF12 [Vega]
ICGC DataPortalENSG00000164631
TCGA cBioPortalZNF12
AceView (NCBI)ZNF12
Genatlas (Paris)ZNF12
WikiGenes7559
SOURCE (Princeton)ZNF12
Genetics Home Reference (NIH)ZNF12
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF12  -     chr7:6688434-6706935 -  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF12  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF12 - 7p22.1 [CytoView hg19]  ZNF12 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF12 [Mapview hg19]  ZNF12 [Mapview hg38]
OMIM194536   
Gene and transcription
Genbank (Entrez)AB021643 AF505656 AI879099 AK022691 AK055709
RefSeq transcript (Entrez)NM_006956 NM_016265
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF12
Cluster EST : UnigeneHs.431471 [ NCBI ]
CGAP (NCI)Hs.431471
Alternative Splicing GalleryENSG00000164631
Gene ExpressionZNF12 [ NCBI-GEO ]   ZNF12 [ EBI - ARRAY_EXPRESS ]   ZNF12 [ SEEK ]   ZNF12 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7559
GTEX Portal (Tissue expression)ZNF12
Human Protein AtlasENSG00000164631-ZNF12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17014   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17014  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17014
Splice isoforms : SwissVarP17014
PhosPhoSitePlusP17014
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF12
DMDM Disease mutations7559
Blocks (Seattle)ZNF12
SuperfamilyP17014
Human Protein Atlas [tissue]ENSG00000164631-ZNF12 [tissue]
Peptide AtlasP17014
HPRD11835
IPIIPI00645116   IPI00893263   IPI00871950   IPI00978007   IPI00744776   IPI00976607   IPI01013428   IPI00894378   
Protein Interaction databases
DIP (DOE-UCLA)P17014
IntAct (EBI)P17014
FunCoupENSG00000164631
BioGRIDZNF12
STRING (EMBL)ZNF12
ZODIACZNF12
Ontologies - Pathways
QuickGOP17014
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  centrosome  transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  centrosome  transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF12
Atlas of Cancer Signalling NetworkZNF12
Wikipedia pathwaysZNF12
Orthology - Evolution
OrthoDB7559
GeneTree (enSembl)ENSG00000164631
Phylogenetic Trees/Animal Genes : TreeFamZNF12
HOVERGENP17014
HOGENOMP17014
Homologs : HomoloGeneZNF12
Homology/Alignments : Family Browser (UCSC)ZNF12
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF12
dbVarZNF12
ClinVarZNF12
1000_GenomesZNF12 
Exome Variant ServerZNF12
ExAC (Exome Aggregation Consortium)ENSG00000164631
GNOMAD BrowserENSG00000164631
Genetic variants : HAPMAP7559
Genomic Variants (DGV)ZNF12 [DGVbeta]
DECIPHERZNF12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF12 
Mutations
ICGC Data PortalZNF12 
TCGA Data PortalZNF12 
Broad Tumor PortalZNF12
OASIS PortalZNF12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF12
DgiDB (Drug Gene Interaction Database)ZNF12
DoCM (Curated mutations)ZNF12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF12 (select a term)
intoGenZNF12
Cancer3DZNF12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194536   
Orphanet
MedgenZNF12
Genetic Testing Registry ZNF12
NextProtP17014 [Medical]
TSGene7559
GENETestsZNF12
Target ValidationZNF12
Huge Navigator ZNF12 [HugePedia]
snp3D : Map Gene to Disease7559
BioCentury BCIQZNF12
ClinGenZNF12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7559
Chemical/Pharm GKB GenePA37491
Clinical trialZNF12
Miscellaneous
canSAR (ICR)ZNF12 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF12
EVEXZNF12
GoPubMedZNF12
iHOPZNF12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:36 CET 2017

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