Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF124 (zinc finger protein 124)

Identity

Alias_nameszinc finger protein 124 (HZF-16)
Alias_symbol (synonym)HZF16
HZF-16
Other aliasZK7
HGNC (Hugo) ZNF124
LocusID (NCBI) 7678
Atlas_Id 75991
Location 1q44  [Link to chromosome band 1q44]
Location_base_pair Starts at 247121975 and ends at 247172017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PIKFYVE (2q34) / ZNF124 (1q44)ZNF124 (1q44) / ELMO1 (7p14.2)ZNF124 (1q44) / PSG6 (19q13.31)
ZNF124 (1q44) / USP9X (Xp11.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF124   12907
Cards
Entrez_Gene (NCBI)ZNF124  7678  zinc finger protein 124
AliasesHZF-16; HZF16; ZK7
GeneCards (Weizmann)ZNF124
Ensembl hg19 (Hinxton)ENSG00000196418 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196418 [Gene_View]  chr1:247121975-247172017 [Contig_View]  ZNF124 [Vega]
ICGC DataPortalENSG00000196418
TCGA cBioPortalZNF124
AceView (NCBI)ZNF124
Genatlas (Paris)ZNF124
WikiGenes7678
SOURCE (Princeton)ZNF124
Genetics Home Reference (NIH)ZNF124
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF124  -     chr1:247121975-247172017 -  1q44   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF124  -     1q44   [Description]    (hg19-Feb_2009)
EnsemblZNF124 - 1q44 [CytoView hg19]  ZNF124 - 1q44 [CytoView hg38]
Mapping of homologs : NCBIZNF124 [Mapview hg19]  ZNF124 [Mapview hg38]
OMIM194631   
Gene and transcription
Genbank (Entrez)AK054647 AK131017 BC013605 BC032514 BC096349
RefSeq transcript (Entrez)NM_001243740 NM_001297567 NM_001297568 NM_001297569 NM_003431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF124
Cluster EST : UnigeneHs.743338 [ NCBI ]
CGAP (NCI)Hs.743338
Alternative Splicing GalleryENSG00000196418
Gene ExpressionZNF124 [ NCBI-GEO ]   ZNF124 [ EBI - ARRAY_EXPRESS ]   ZNF124 [ SEEK ]   ZNF124 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF124 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7678
GTEX Portal (Tissue expression)ZNF124
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15973   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15973  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15973
Splice isoforms : SwissVarQ15973
PhosPhoSitePlusQ15973
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF124
DMDM Disease mutations7678
Blocks (Seattle)ZNF124
SuperfamilyQ15973
Human Protein AtlasENSG00000196418
Peptide AtlasQ15973
HPRD01936
IPIIPI00221056   IPI00607632   IPI00514866   IPI01019124   IPI00020556   
Protein Interaction databases
DIP (DOE-UCLA)Q15973
IntAct (EBI)Q15973
FunCoupENSG00000196418
BioGRIDZNF124
STRING (EMBL)ZNF124
ZODIACZNF124
Ontologies - Pathways
QuickGOQ15973
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF124
Atlas of Cancer Signalling NetworkZNF124
Wikipedia pathwaysZNF124
Orthology - Evolution
OrthoDB7678
GeneTree (enSembl)ENSG00000196418
Phylogenetic Trees/Animal Genes : TreeFamZNF124
HOVERGENQ15973
HOGENOMQ15973
Homologs : HomoloGeneZNF124
Homology/Alignments : Family Browser (UCSC)ZNF124
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF124 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF124
dbVarZNF124
ClinVarZNF124
1000_GenomesZNF124 
Exome Variant ServerZNF124
ExAC (Exome Aggregation Consortium)ZNF124 (select the gene name)
Genetic variants : HAPMAP7678
Genomic Variants (DGV)ZNF124 [DGVbeta]
DECIPHERZNF124 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF124 
Mutations
ICGC Data PortalZNF124 
TCGA Data PortalZNF124 
Broad Tumor PortalZNF124
OASIS PortalZNF124 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF124  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF124
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF124
DgiDB (Drug Gene Interaction Database)ZNF124
DoCM (Curated mutations)ZNF124 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF124 (select a term)
intoGenZNF124
Cancer3DZNF124(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194631   
Orphanet
MedgenZNF124
Genetic Testing Registry ZNF124
NextProtQ15973 [Medical]
TSGene7678
GENETestsZNF124
Target ValidationZNF124
Huge Navigator ZNF124 [HugePedia]
snp3D : Map Gene to Disease7678
BioCentury BCIQZNF124
ClinGenZNF124
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7678
Chemical/Pharm GKB GenePA37496
Clinical trialZNF124
Miscellaneous
canSAR (ICR)ZNF124 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF124
EVEXZNF124
GoPubMedZNF124
iHOPZNF124
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:53 CEST 2017

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