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ZNF138 (zinc finger protein 138)

Identity

Alias_nameszinc finger protein 138 (clone pHZ-32)
Alias_symbol (synonym)pHZ-32
Other alias
HGNC (Hugo) ZNF138
LocusID (NCBI) 7697
Atlas_Id 75996
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64794388 and ends at 64833681 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF138   12922
Cards
Entrez_Gene (NCBI)ZNF138  7697  zinc finger protein 138
AliasespHZ-32
GeneCards (Weizmann)ZNF138
Ensembl hg19 (Hinxton)ENSG00000197008 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197008 [Gene_View]  chr7:64794388-64833681 [Contig_View]  ZNF138 [Vega]
ICGC DataPortalENSG00000197008
TCGA cBioPortalZNF138
AceView (NCBI)ZNF138
Genatlas (Paris)ZNF138
WikiGenes7697
SOURCE (Princeton)ZNF138
Genetics Home Reference (NIH)ZNF138
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF138  -     chr7:64794388-64833681 +  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF138  -     7q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF138 - 7q11.21 [CytoView hg19]  ZNF138 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF138 [Mapview hg19]  ZNF138 [Mapview hg38]
OMIM604080   
Gene and transcription
Genbank (Entrez)AA114243 AK027335 AK055644 AK294302 AK298230
RefSeq transcript (Entrez)NM_001160183 NM_001271637 NM_001271638 NM_001271639 NM_001271640 NM_001271649 NM_006524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF138
Cluster EST : UnigeneHs.184080 [ NCBI ]
CGAP (NCI)Hs.184080
Alternative Splicing GalleryENSG00000197008
Gene ExpressionZNF138 [ NCBI-GEO ]   ZNF138 [ EBI - ARRAY_EXPRESS ]   ZNF138 [ SEEK ]   ZNF138 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF138 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7697
GTEX Portal (Tissue expression)ZNF138
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52744   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52744  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52744
Splice isoforms : SwissVarP52744
PhosPhoSitePlusP52744
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF138
DMDM Disease mutations7697
Blocks (Seattle)ZNF138
SuperfamilyP52744
Human Protein AtlasENSG00000197008
Peptide AtlasP52744
HPRD07244
IPIIPI00788026   IPI00908340   IPI00927283   IPI00927070   IPI00926871   IPI00377099   
Protein Interaction databases
DIP (DOE-UCLA)P52744
IntAct (EBI)P52744
FunCoupENSG00000197008
BioGRIDZNF138
STRING (EMBL)ZNF138
ZODIACZNF138
Ontologies - Pathways
QuickGOP52744
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF138
Atlas of Cancer Signalling NetworkZNF138
Wikipedia pathwaysZNF138
Orthology - Evolution
OrthoDB7697
GeneTree (enSembl)ENSG00000197008
Phylogenetic Trees/Animal Genes : TreeFamZNF138
HOVERGENP52744
HOGENOMP52744
Homologs : HomoloGeneZNF138
Homology/Alignments : Family Browser (UCSC)ZNF138
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF138 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF138
dbVarZNF138
ClinVarZNF138
1000_GenomesZNF138 
Exome Variant ServerZNF138
ExAC (Exome Aggregation Consortium)ZNF138 (select the gene name)
Genetic variants : HAPMAP7697
Genomic Variants (DGV)ZNF138 [DGVbeta]
DECIPHERZNF138 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF138 
Mutations
ICGC Data PortalZNF138 
TCGA Data PortalZNF138 
Broad Tumor PortalZNF138
OASIS PortalZNF138 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF138  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF138
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF138
DgiDB (Drug Gene Interaction Database)ZNF138
DoCM (Curated mutations)ZNF138 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF138 (select a term)
intoGenZNF138
Cancẹ3D<-TD>ZNF138(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604080   
Orphanet
MedgenZNF138
Genetic Testing Registry ZNF138
NextProtP52744 [Medical]
TSGene7697
GENETestsZNF138
Target ValidationZNF138
Huge Navigator ZNF138 [HugePedia]
snp3D : Map Gene to Disease7697
BioCentury BCIQZNF138
ClinGenZNF138
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7697
Chemical/Pharm GKB GenePA37510
Clinical trialZNF138
Miscellaneous
canSAR (ICR)ZNF138 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF138
EVEXZNF138
GoPubMedZNF138
iHOPZNF138
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:25 CEST 2017

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