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ZNF140 (zinc finger protein 140)

Identity

Alias_nameszinc finger protein 140 (clone pHZ-39)
Alias_symbol (synonym)pHZ-39
Other alias
HGNC (Hugo) ZNF140
LocusID (NCBI) 7699
Atlas_Id 75998
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 133080203 and ends at 133107672 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF140   12925
Cards
Entrez_Gene (NCBI)ZNF140  7699  zinc finger protein 140
AliasespHZ-39
GeneCards (Weizmann)ZNF140
Ensembl hg19 (Hinxton)ENSG00000196387 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196387 [Gene_View]  chr12:133080203-133107672 [Contig_View]  ZNF140 [Vega]
ICGC DataPortalENSG00000196387
TCGA cBioPortalZNF140
AceView (NCBI)ZNF140
Genatlas (Paris)ZNF140
WikiGenes7699
SOURCE (Princeton)ZNF140
Genetics Home Reference (NIH)ZNF140
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF140  -     chr12:133080203-133107672 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF140  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblZNF140 - 12q24.33 [CytoView hg19]  ZNF140 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIZNF140 [Mapview hg19]  ZNF140 [Mapview hg38]
OMIM604082   
Gene and transcription
Genbank (Entrez)AK122741 AK296572 AK303240 AK313145 BC022291
RefSeq transcript (Entrez)NM_001300776 NM_001300777 NM_001300778 NM_003440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF140
Cluster EST : UnigeneHs.181552 [ NCBI ]
CGAP (NCI)Hs.181552
Alternative Splicing GalleryENSG00000196387
Gene ExpressionZNF140 [ NCBI-GEO ]   ZNF140 [ EBI - ARRAY_EXPRESS ]   ZNF140 [ SEEK ]   ZNF140 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF140 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7699
GTEX Portal (Tissue expression)ZNF140
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52738   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52738  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52738
Splice isoforms : SwissVarP52738
PhosPhoSitePlusP52738
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF140
DMDM Disease mutations7699
Blocks (Seattle)ZNF140
SuperfamilyP52738
Human Protein AtlasENSG00000196387
Peptide AtlasP52738
HPRD04966
IPIIPI00004981   IPI00943090   IPI01010734   IPI01009346   IPI00794749   IPI01010736   IPI01014715   IPI01015208   IPI00874090   IPI01016055   IPI01013957   
Protein Interaction databases
DIP (DOE-UCLA)P52738
IntAct (EBI)P52738
FunCoupENSG00000196387
BioGRIDZNF140
STRING (EMBL)ZNF140
ZODIACZNF140
Ontologies - Pathways
QuickGOP52738
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF140
Atlas of Cancer Signalling NetworkZNF140
Wikipedia pathwaysZNF140
Orthology - Evolution
OrthoDB7699
GeneTree (enSembl)ENSG00000196387
Phylogenetic Trees/Animal Genes : TreeFamZNF140
HOVERGENP52738
HOGENOMP52738
Homologs : HomoloGeneZNF140
Homology/Alignments : Family Browser (UCSC)ZNF140
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF140 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF140
dbVarZNF140
ClinVarZNF140
1000_GenomesZNF140 
Exome Variant ServerZNF140
ExAC (Exome Aggregation Consortium)ZNF140 (select the gene name)
Genetic variants : HAPMAP7699
Genomic Variants (DGV)ZNF140 [DGVbeta]
DECIPHERZNF140 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF140 
Mutations
ICGC Data PortalZNF140 
TCGA Data PortalZNF140 
Broad Tumor PortalZNF140
OASIS PortalZNF140 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF140  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF140
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF140
DgiDB (Drug Gene Interaction Database)ZNF140
DoCM (Curated mutations)ZNF140 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF140 (select a term)
intoGenZNF140
Cancer3DZNF140(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604082   
Orphanet
MedgenZNF140
Genetic Testing Registry ZNF140
NextProtP52738 [Medical]
TSGene7699
GENETestsZNF140
Target ValidationZNF140
Huge Navigator ZNF140 [HugePedia]
snp3D : Map Gene to Disease7699
BioCentury BCIQZNF140
ClinGenZNF140
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7699
Chemical/Pharm GKB GenePA37512
Clinical trialZNF140
Miscellaneous
canSAR (ICR)ZNF140 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF140
EVEXZNF140
GoPubMedZNF140
iHOPZNF140
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:55 CEST 2017

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