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ZNF142 (zinc finger protein 142)

Identity

Alias_nameszinc finger protein 142 (clone pHZ-49)
Alias_symbol (synonym)KIAA0236
pHZ-49
Other alias
HGNC (Hugo) ZNF142
LocusID (NCBI) 7701
Atlas_Id 76000
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 218637916 and ends at 218659540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HNRNPM (19p13.2) / ZNF142 (2q35)ZNF142 (2q35) / ZNF142 (2q35)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF142   12927
Cards
Entrez_Gene (NCBI)ZNF142  7701  zinc finger protein 142
AliasespHZ-49
GeneCards (Weizmann)ZNF142
Ensembl hg19 (Hinxton)ENSG00000115568 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115568 [Gene_View]  chr2:218637916-218659540 [Contig_View]  ZNF142 [Vega]
ICGC DataPortalENSG00000115568
TCGA cBioPortalZNF142
AceView (NCBI)ZNF142
Genatlas (Paris)ZNF142
WikiGenes7701
SOURCE (Princeton)ZNF142
Genetics Home Reference (NIH)ZNF142
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF142  -     chr2:218637916-218659540 -  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF142  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblZNF142 - 2q35 [CytoView hg19]  ZNF142 - 2q35 [CytoView hg38]
Mapping of homologs : NCBIZNF142 [Mapview hg19]  ZNF142 [Mapview hg38]
OMIM604083   
Gene and transcription
Genbank (Entrez)AK095027 BC033631 BC038226 BC053849 BM719343
RefSeq transcript (Entrez)NM_001105537 NM_005081
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF142
Cluster EST : UnigeneHs.657969 [ NCBI ]
CGAP (NCI)Hs.657969
Alternative Splicing GalleryENSG00000115568
Gene ExpressionZNF142 [ NCBI-GEO ]   ZNF142 [ EBI - ARRAY_EXPRESS ]   ZNF142 [ SEEK ]   ZNF142 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF142 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7701
GTEX Portal (Tissue expression)ZNF142
Human Protein AtlasENSG00000115568-ZNF142 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52746   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52746  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52746
Splice isoforms : SwissVarP52746
PhosPhoSitePlusP52746
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF142
DMDM Disease mutations7701
Blocks (Seattle)ZNF142
SuperfamilyP52746
Human Protein Atlas [tissue]ENSG00000115568-ZNF142 [tissue]
Peptide AtlasP52746
HPRD04967
IPIIPI00005004   IPI00867615   IPI00926482   IPI00926901   IPI00926236   IPI00927313   
Protein Interaction databases
DIP (DOE-UCLA)P52746
IntAct (EBI)P52746
FunCoupENSG00000115568
BioGRIDZNF142
STRING (EMBL)ZNF142
ZODIACZNF142
Ontologies - Pathways
QuickGOP52746
Ontology : AmiGOmolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF142
Atlas of Cancer Signalling NetworkZNF142
Wikipedia pathwaysZNF142
Orthology - Evolution
OrthoDB7701
GeneTree (enSembl)ENSG00000115568
Phylogenetic Trees/Animal Genes : TreeFamZNF142
HOVERGENP52746
HOGENOMP52746
Homologs : HomoloGeneZNF142
Homology/Alignments : Family Browser (UCSC)ZNF142
Gene fusions - Rearrangements
Tumor Fusion PortalZNF142
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF142 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF142
dbVarZNF142
ClinVarZNF142
1000_GenomesZNF142 
Exome Variant ServerZNF142
ExAC (Exome Aggregation Consortium)ENSG00000115568
GNOMAD BrowserENSG00000115568
Genetic variants : HAPMAP7701
Genomic Variants (DGV)ZNF142 [DGVbeta]
DECIPHERZNF142 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF142 
Mutations
ICGC Data PortalZNF142 
TCGA Data PortalZNF142 
Broad Tumor PortalZNF142
OASIS PortalZNF142 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF142  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF142
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF142
DgiDB (Drug Gene Interaction Database)ZNF142
DoCM (Curated mutations)ZNF142 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF142 (select a term)
intoGenZNF142
Cancer3DZNF142(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604083   
Orphanet
DisGeNETZNF142
MedgenZNF142
Genetic Testing Registry ZNF142
NextProtP52746 [Medical]
TSGene7701
GENETestsZNF142
Target ValidationZNF142
Huge Navigator ZNF142 [HugePedia]
snp3D : Map Gene to Disease7701
BioCentury BCIQZNF142
ClinGenZNF142
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7701
Chemical/Pharm GKB GenePA37514
Clinical trialZNF142
Miscellaneous
canSAR (ICR)ZNF142 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF142
EVEXZNF142
GoPubMedZNF142
iHOPZNF142
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:06:51 CET 2017

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