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ZNF143 (zinc finger protein 143)

Identity

Other namesSBF
STAF
pHZ-1
HGNC (Hugo) ZNF143
LocusID (NCBI) 7702
Atlas_Id 42871
Location 11p15.4
Location_base_pair Starts at 9482512 and ends at 9550071 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
MEIS2 15q14 / ZNF143 11p15.4SWAP70 11p15.4 / ZNF143 11p15.4ZNF143 11p15.4 / TMEM41B 11p15.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF143   12928
Cards
Entrez_Gene (NCBI)ZNF143  7702  zinc finger protein 143
GeneCards (Weizmann)ZNF143
Ensembl hg19 (Hinxton)ENSG00000166478 [Gene_View]  chr11:9482512-9550071 [Contig_View]  ZNF143 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166478 [Gene_View]  chr11:9482512-9550071 [Contig_View]  ZNF143 [Vega]
ICGC DataPortalENSG00000166478
TCGA cBioPortalZNF143
AceView (NCBI)ZNF143
Genatlas (Paris)ZNF143
WikiGenes7702
SOURCE (Princeton)ZNF143
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF143  -     chr11:9482512-9550071 +  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF143  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblZNF143 - 11p15.4 [CytoView hg19]  ZNF143 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIZNF143 [Mapview hg19]  ZNF143 [Mapview hg38]
OMIM603433   
Gene and transcription
Genbank (Entrez)AF071771 AK291133 AK297214 AK313330 AW162015
RefSeq transcript (Entrez)NM_001282656 NM_001282657 NM_003442
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)ZNF143
Cluster EST : UnigeneHs.523471 [ NCBI ]
CGAP (NCI)Hs.523471
Alternative Splicing : Fast-db (Paris)GSHG0004628
Alternative Splicing GalleryENSG00000166478
Gene ExpressionZNF143 [ NCBI-GEO ]     ZNF143 [ SEEK ]   ZNF143 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7702
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52747 (Uniprot)
NextProtP52747  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52747
Splice isoforms : SwissVarP52747 (Swissvar)
PhosPhoSitePlusP52747
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations7702
Blocks (Seattle)ZNF143
Human Protein AtlasENSG00000166478
Peptide AtlasP52747
HPRD04578
IPIIPI00305316   IPI00929121   IPI01013103   IPI00853046   IPI00852701   IPI00979976   IPI00852831   IPI00852950   IPI01010037   IPI00983619   IPI01009753   IPI00852612   IPI00976507   IPI00984223   IPI00983348   
Protein Interaction databases
DIP (DOE-UCLA)P52747
IntAct (EBI)P52747
FunCoupENSG00000166478
BioGRIDZNF143
IntegromeDBZNF143
STRING (EMBL)ZNF143
ZODIACZNF143
Ontologies - Pathways
QuickGOP52747
Ontology : AmiGODNA binding  chromatin binding  protein binding  nucleoplasm  regulation of transcription from RNA polymerase II promoter  regulation of transcription from RNA polymerase III promoter  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  gene expression  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  positive regulation of smooth muscle cell proliferation  
Ontology : EGO-EBIDNA binding  chromatin binding  protein binding  nucleoplasm  regulation of transcription from RNA polymerase II promoter  regulation of transcription from RNA polymerase III promoter  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  gene expression  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  positive regulation of smooth muscle cell proliferation  
Protein Interaction DatabaseZNF143
Atlas of Cancer Signalling NetworkZNF143
Wikipedia pathwaysZNF143
Orthology - Evolution
OrthoDB7702
GeneTree (enSembl)ENSG00000166478
Phylogenetic Trees/Animal Genes : TreeFamZNF143
Homologs : HomoloGeneZNF143
Homology/Alignments : Family Browser (UCSC)ZNF143
Gene fusions - Rearrangements
Fusion: TCGAMEIS2 15q14 ZNF143 11p15.4 GBM
Fusion: TCGASWAP70 11p15.4 ZNF143 11p15.4 LGG LUAD
Fusion: TCGAZNF143 11p15.4 TMEM41B 11p15.4 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerZNF143 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF143
dbVarZNF143
ClinVarZNF143
1000_GenomesZNF143 
Exome Variant ServerZNF143
Exome Aggregation Consortium (ExAC)ENSG00000166478
SNP (GeneSNP Utah)ZNF143
SNP : HGBaseZNF143
Genetic variants : HAPMAPZNF143
Genomic Variants (DGV)ZNF143 [DGVbeta]
Mutations
ICGC Data PortalZNF143 
TCGA Data PortalZNF143 
Tumor PortalZNF143
TCGA Copy Number PortalZNF143
Somatic Mutations in Cancer : COSMICZNF143 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF143
DgiDB (Drug Gene Interaction Database)ZNF143
DoCM (Curated mutations)ZNF143 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF143 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)11:9482512-9550071
CONAN: Copy Number AnalysisZNF143 
Mutations and Diseases : HGMDZNF143
OMIM603433   
MedgenZNF143
NextProtP52747 [Medical]
TSGene7702
GENETestsZNF143
Huge Navigator ZNF143 [HugePedia]  ZNF143 [HugeCancerGEM]
snp3D : Map Gene to Disease7702
BioCentury BCIQZNF143
General knowledge
Chemical/Protein Interactions : CTD7702
Chemical/Pharm GKB GenePA37515
Clinical trialZNF143
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF143
GoPubMedZNF143
iHOPZNF143
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:46:39 CET 2016

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