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ZNF148 (zinc finger protein 148)

Identity

Alias (NCBI)BERF-1
BFCOL1
GDACCF
HT-BETA
ZBP-89
ZFP148
pHZ-52
HGNC (Hugo) ZNF148
HGNC Alias symbBERF-1
ZBP-89
BFCOL1
HT-BETA
ZFP148
pHZ-52
HGNC Previous namezinc finger protein 148 (pHZ-52)
LocusID (NCBI) 7707
Atlas_Id 46260
Location 3q21.2  [Link to chromosome band 3q21]
Location_base_pair Starts at 125225669 and ends at 125375354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DARS (2q21.3) / ZNF148 (3q21.2)ZNF148 (3q21.2) / FHAD1 (1p36.21)ZNF148 (3q21.2) / YPEL2 (17q22)
ZNF148 3q21.2 / FHAD1 1p36.21ZNF148 3q21.2 / YPEL2 17q22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF148   12933
Cards
Entrez_Gene (NCBI)ZNF148    zinc finger protein 148
AliasesBERF-1; BFCOL1; GDACCF; HT-BETA; 
ZBP-89; ZFP148; pHZ-52
GeneCards (Weizmann)ZNF148
Ensembl hg19 (Hinxton)ENSG00000163848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163848 [Gene_View]  ENSG00000163848 [Sequence]  chr3:125225669-125375354 [Contig_View]  ZNF148 [Vega]
ICGC DataPortalENSG00000163848
TCGA cBioPortalZNF148
AceView (NCBI)ZNF148
Genatlas (Paris)ZNF148
SOURCE (Princeton)ZNF148
Genetics Home Reference (NIH)ZNF148
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF148  -     chr3:125225669-125375354 -  3q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF148  -     3q21.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF148 - 3q21.2 [CytoView hg19]  ZNF148 - 3q21.2 [CytoView hg38]
ImmunoBaseENSG00000163848
Genome Data Viewer NCBIZNF148 [Mapview hg19]  
OMIM601897   617260   
Gene and transcription
Genbank (Entrez)AA481164 AF039019 AF432210 AJ236885 AK314203
RefSeq transcript (Entrez)NM_001348424 NM_001348425 NM_001348426 NM_001348427 NM_001348428 NM_001348429 NM_001348430 NM_001348431 NM_001348432 NM_001348433 NM_001348434 NM_001348436 NM_021964
Consensus coding sequences : CCDS (NCBI)ZNF148
Gene ExpressionZNF148 [ NCBI-GEO ]   ZNF148 [ EBI - ARRAY_EXPRESS ]   ZNF148 [ SEEK ]   ZNF148 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF148 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF148 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7707
GTEX Portal (Tissue expression)ZNF148
Human Protein AtlasENSG00000163848-ZNF148 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQR1
PhosPhoSitePlusQ9UQR1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF148
SuperfamilyQ9UQR1
AlphaFold pdb e-kbQ9UQR1   
Human Protein Atlas [tissue]ENSG00000163848-ZNF148 [tissue]
HPRD03540
Protein Interaction databases
DIP (DOE-UCLA)Q9UQR1
IntAct (EBI)Q9UQR1
BioGRIDZNF148
STRING (EMBL)ZNF148
ZODIACZNF148
Ontologies - Pathways
QuickGOQ9UQR1
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  negative regulation of transcription by RNA polymerase II  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleoplasm  Golgi apparatus  regulation of transcription by RNA polymerase II  cellular defense response  gamete generation  negative regulation of gene expression  substantia nigra development  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  metal ion binding  protein-containing complex assembly  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  negative regulation of transcription by RNA polymerase II  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  protein binding  nucleoplasm  Golgi apparatus  regulation of transcription by RNA polymerase II  cellular defense response  gamete generation  negative regulation of gene expression  substantia nigra development  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  metal ion binding  protein-containing complex assembly  
NDEx NetworkZNF148
Atlas of Cancer Signalling NetworkZNF148
Wikipedia pathwaysZNF148
Orthology - Evolution
OrthoDB7707
GeneTree (enSembl)ENSG00000163848
Phylogenetic Trees/Animal Genes : TreeFamZNF148
Homologs : HomoloGeneZNF148
Homology/Alignments : Family Browser (UCSC)ZNF148
Gene fusions - Rearrangements
Fusion : MitelmanZNF148/FHAD1 [3q21.2/1p36.21]  
Fusion : MitelmanZNF148/YPEL2 [3q21.2/17q22]  
Fusion : QuiverZNF148
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF148 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF148
dbVarZNF148
ClinVarZNF148
MonarchZNF148
1000_GenomesZNF148 
Exome Variant ServerZNF148
GNOMAD BrowserENSG00000163848
Varsome BrowserZNF148
ACMGZNF148 variants
VarityQ9UQR1
Genomic Variants (DGV)ZNF148 [DGVbeta]
DECIPHERZNF148 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF148 
Mutations
ICGC Data PortalZNF148 
TCGA Data PortalZNF148 
Broad Tumor PortalZNF148
OASIS PortalZNF148 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF148  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF148
Mutations and Diseases : HGMDZNF148
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF148
DgiDB (Drug Gene Interaction Database)ZNF148
DoCM (Curated mutations)ZNF148
CIViC (Clinical Interpretations of Variants in Cancer)ZNF148
Cancer3DZNF148
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601897    617260   
Orphanet
DisGeNETZNF148
MedgenZNF148
Genetic Testing Registry ZNF148
NextProtQ9UQR1 [Medical]
GENETestsZNF148
Target ValidationZNF148
Huge Navigator ZNF148 [HugePedia]
ClinGenZNF148
Clinical trials, drugs, therapy
MyCancerGenomeZNF148
Protein Interactions : CTDZNF148
Pharm GKB GenePA37520
PharosQ9UQR1
Clinical trialZNF148
Miscellaneous
canSAR (ICR)ZNF148
HarmonizomeZNF148
DataMed IndexZNF148
Probes
Litterature
PubMed95 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF148
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:39:07 CEST 2021

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