Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF148 (zinc finger protein 148)

Identity

Alias_nameszinc finger protein 148 (pHZ-52)
Alias_symbol (synonym)BERF-1
ZBP-89
BFCOL1
HT-BETA
ZFP148
pHZ-52
Other aliasGDACCF
HGNC (Hugo) ZNF148
LocusID (NCBI) 7707
Atlas_Id 46260
Location 3q21.2  [Link to chromosome band 3q21]
Location_base_pair Starts at 125225669 and ends at 125374709 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DARS (2q21.3) / ZNF148 (3q21.2)ZNF148 (3q21.2) / FHAD1 (1p36.21)ZNF148 (3q21.2) / YPEL2 (17q22)
ZNF148 3q21.2 / FHAD1 1p36.21ZNF148 3q21.2 / YPEL2 17q22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF148   12933
Cards
Entrez_Gene (NCBI)ZNF148  7707  zinc finger protein 148
AliasesBERF-1; BFCOL1; GDACCF; HT-BETA; 
ZBP-89; ZFP148; pHZ-52
GeneCards (Weizmann)ZNF148
Ensembl hg19 (Hinxton)ENSG00000163848 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163848 [Gene_View]  chr3:125225669-125374709 [Contig_View]  ZNF148 [Vega]
ICGC DataPortalENSG00000163848
TCGA cBioPortalZNF148
AceView (NCBI)ZNF148
Genatlas (Paris)ZNF148
WikiGenes7707
SOURCE (Princeton)ZNF148
Genetics Home Reference (NIH)ZNF148
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF148  -     chr3:125225669-125374709 -  3q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF148  -     3q21.2   [Description]    (hg19-Feb_2009)
EnsemblZNF148 - 3q21.2 [CytoView hg19]  ZNF148 - 3q21.2 [CytoView hg38]
Mapping of homologs : NCBIZNF148 [Mapview hg19]  ZNF148 [Mapview hg38]
OMIM601897   617260   
Gene and transcription
Genbank (Entrez)AA481164 AF039019 AF432210 AJ236885 AK314203
RefSeq transcript (Entrez)NM_001348424 NM_001348425 NM_001348426 NM_001348427 NM_001348428 NM_001348429 NM_001348430 NM_001348431 NM_001348432 NM_001348433 NM_001348434 NM_001348436 NM_021964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF148
Cluster EST : UnigeneHs.592591 [ NCBI ]
CGAP (NCI)Hs.592591
Alternative Splicing GalleryENSG00000163848
Gene ExpressionZNF148 [ NCBI-GEO ]   ZNF148 [ EBI - ARRAY_EXPRESS ]   ZNF148 [ SEEK ]   ZNF148 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF148 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7707
GTEX Portal (Tissue expression)ZNF148
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQR1
Splice isoforms : SwissVarQ9UQR1
PhosPhoSitePlusQ9UQR1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF148
DMDM Disease mutations7707
Blocks (Seattle)ZNF148
SuperfamilyQ9UQR1
Human Protein AtlasENSG00000163848
Peptide AtlasQ9UQR1
HPRD03540
IPIIPI00010833   IPI00972956   IPI00815908   IPI00448928   IPI00969449   IPI00969027   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQR1
IntAct (EBI)Q9UQR1
FunCoupENSG00000163848
BioGRIDZNF148
STRING (EMBL)ZNF148
ZODIACZNF148
Ontologies - Pathways
QuickGOQ9UQR1
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  Golgi apparatus  transcription from RNA polymerase II promoter  protein complex assembly  cellular defense response  gamete generation  negative regulation of gene expression  substantia nigra development  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  protein binding  nucleus  Golgi apparatus  transcription from RNA polymerase II promoter  protein complex assembly  cellular defense response  gamete generation  negative regulation of gene expression  substantia nigra development  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF148
Atlas of Cancer Signalling NetworkZNF148
Wikipedia pathwaysZNF148
Orthology - Evolution
OrthoDB7707
GeneTree (enSembl)ENSG00000163848
Phylogenetic Trees/Animal Genes : TreeFamZNF148
HOVERGENQ9UQR1
HOGENOMQ9UQR1
Homologs : HomoloGeneZNF148
Homology/Alignments : Family Browser (UCSC)ZNF148
Gene fusions - Rearrangements
Fusion : MitelmanZNF148/FHAD1 [3q21.2/1p36.21]  
Fusion : MitelmanZNF148/YPEL2 [3q21.2/17q22]  [t(3;17)(q21;q22)]  
Fusion: TCGAZNF148 3q21.2 FHAD1 1p36.21 BRCA
Fusion: TCGAZNF148 3q21.2 YPEL2 17q22 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF148 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF148
dbVarZNF148
ClinVarZNF148
1000_GenomesZNF148 
Exome Variant ServerZNF148
ExAC (Exome Aggregation Consortium)ZNF148 (select the gene name)
Genetic variants : HAPMAP7707
Genomic Variants (DGV)ZNF148 [DGVbeta]
DECIPHERZNF148 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF148 
Mutations
ICGC Data PortalZNF148 
TCGA Data PortalZNF148 
Broad Tumor PortalZNF148
OASIS PortalZNF148 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF148  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF148
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF148
DgiDB (Drug Gene Interaction Database)ZNF148
DoCM (Curated mutations)ZNF148 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF148 (select a term)
intoGenZNF148
Cancer3DZNF148(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601897    617260   
Orphanet
MedgenZNF148
Genetic Testing Registry ZNF148
NextProtQ9UQR1 [Medical]
TSGene7707
GENETestsZNF148
Target ValidationZNF148
Huge Navigator ZNF148 [HugePedia]
snp3D : Map Gene to Disease7707
BioCentury BCIQZNF148
ClinGenZNF148
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7707
Chemical/Pharm GKB GenePA37520
Clinical trialZNF148
Miscellaneous
canSAR (ICR)ZNF148 (select the gene name)
Probes
Litterature
PubMed60 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF148
EVEXZNF148
GoPubMedZNF148
iHOPZNF148
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:38 CEST 2017

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