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ZNF154 (zinc finger protein 154)

Identity

Alias_nameszinc finger protein 154 (pHZ-92)
Alias_symbol (synonym)pHZ-92
Other alias
HGNC (Hugo) ZNF154
LocusID (NCBI) 7710
Atlas_Id 53433
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58207643 and ends at 58220579 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF154   12939
Cards
Entrez_Gene (NCBI)ZNF154  7710  zinc finger protein 154
AliasespHZ-92
GeneCards (Weizmann)ZNF154
Ensembl hg19 (Hinxton)ENSG00000179909 [Gene_View]  chr19:58207643-58220579 [Contig_View]  ZNF154 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179909 [Gene_View]  chr19:58207643-58220579 [Contig_View]  ZNF154 [Vega]
ICGC DataPortalENSG00000179909
TCGA cBioPortalZNF154
AceView (NCBI)ZNF154
Genatlas (Paris)ZNF154
WikiGenes7710
SOURCE (Princeton)ZNF154
Genetics Home Reference (NIH)ZNF154
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF154  -     chr19:58207643-58220579 -  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF154  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF154 - 19q13.43 [CytoView hg19]  ZNF154 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF154 [Mapview hg19]  ZNF154 [Mapview hg38]
OMIM604085   
Gene and transcription
Genbank (Entrez)AB095924 AI949650 AK092261 BC152404 BC152426
RefSeq transcript (Entrez)NM_001085384 NM_003444
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_034060 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF154
Cluster EST : UnigeneHs.646378 [ NCBI ]
CGAP (NCI)Hs.646378
Alternative Splicing GalleryENSG00000179909
Gene ExpressionZNF154 [ NCBI-GEO ]   ZNF154 [ EBI - ARRAY_EXPRESS ]   ZNF154 [ SEEK ]   ZNF154 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF154 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7710
GTEX Portal (Tissue expression)ZNF154
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13106   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13106  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13106
Splice isoforms : SwissVarQ13106
PhosPhoSitePlusQ13106
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF154
DMDM Disease mutations7710
Blocks (Seattle)ZNF154
SuperfamilyQ13106
Human Protein AtlasENSG00000179909
Peptide AtlasQ13106
HPRD07245
IPIIPI00332890   IPI01015260   
Protein Interaction databases
DIP (DOE-UCLA)Q13106
IntAct (EBI)Q13106
FunCoupENSG00000179909
BioGRIDZNF154
STRING (EMBL)ZNF154
ZODIACZNF154
Ontologies - Pathways
QuickGOQ13106
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF154
Atlas of Cancer Signalling NetworkZNF154
Wikipedia pathwaysZNF154
Orthology - Evolution
OrthoDB7710
GeneTree (enSembl)ENSG00000179909
Phylogenetic Trees/Animal Genes : TreeFamZNF154
HOVERGENQ13106
HOGENOMQ13106
Homologs : HomoloGeneZNF154
Homology/Alignments : Family Browser (UCSC)ZNF154
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF154 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF154
dbVarZNF154
ClinVarZNF154
1000_GenomesZNF154 
Exome Variant ServerZNF154
ExAC (Exome Aggregation Consortium)ZNF154 (select the gene name)
Genetic variants : HAPMAP7710
Genomic Variants (DGV)ZNF154 [DGVbeta]
DECIPHER (Syndromes)19:58207643-58220579  ENSG00000179909
CONAN: Copy Number AnalysisZNF154 
Mutations
ICGC Data PortalZNF154 
TCGA Data PortalZNF154 
Broad Tumor PortalZNF154
OASIS PortalZNF154 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF154  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF154
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF154
DgiDB (Drug Gene Interaction Database)ZNF154
DoCM (Curated mutations)ZNF154 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF154 (select a term)
intoGenZNF154
Cancer3DZNF154(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604085   
Orphanet
MedgenZNF154
Genetic Testing Registry ZNF154
NextProtQ13106 [Medical]
TSGene7710
GENETestsZNF154
Huge Navigator ZNF154 [HugePedia]
snp3D : Map Gene to Disease7710
BioCentury BCIQZNF154
ClinGenZNF154
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7710
Chemical/Pharm GKB GenePA37523
Clinical trialZNF154
Miscellaneous
canSAR (ICR)ZNF154 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF154
EVEXZNF154
GoPubMedZNF154
iHOPZNF154
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:39 CEST 2017

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