Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF16 (zinc finger protein 16)

Identity

Alias_nameszinc finger protein 16 (KOX 9)
Alias_symbol (synonym)KOX9
Other aliasHZF1
HGNC (Hugo) ZNF16
LocusID (NCBI) 7564
Atlas_Id 55995
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 146155744 and ends at 146176274 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KCNH7 (2q24.2) / ZNF16 (8q24.3)SLC16A2 (Xq13.2) / ZNF16 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF16   12947
Cards
Entrez_Gene (NCBI)ZNF16  7564  zinc finger protein 16
AliasesHZF1; KOX9
GeneCards (Weizmann)ZNF16
Ensembl hg19 (Hinxton)ENSG00000170631 [Gene_View]  chr8:146155744-146176274 [Contig_View]  ZNF16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170631 [Gene_View]  chr8:146155744-146176274 [Contig_View]  ZNF16 [Vega]
ICGC DataPortalENSG00000170631
TCGA cBioPortalZNF16
AceView (NCBI)ZNF16
Genatlas (Paris)ZNF16
WikiGenes7564
SOURCE (Princeton)ZNF16
Genetics Home Reference (NIH)ZNF16
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF16  -     chr8:146155744-146176274 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF16  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblZNF16 - 8q24.3 [CytoView hg19]  ZNF16 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF16 [Mapview hg19]  ZNF16 [Mapview hg38]
OMIM601262   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001029976 NM_006958
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF16
Cluster EST : UnigeneHs.493225 [ NCBI ]
CGAP (NCI)Hs.493225
Alternative Splicing GalleryENSG00000170631
Gene ExpressionZNF16 [ NCBI-GEO ]   ZNF16 [ EBI - ARRAY_EXPRESS ]   ZNF16 [ SEEK ]   ZNF16 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7564
GTEX Portal (Tissue expression)ZNF16
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17020   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17020  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17020
Splice isoforms : SwissVarP17020
PhosPhoSitePlusP17020
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF16
DMDM Disease mutations7564
Blocks (Seattle)ZNF16
SuperfamilyP17020
Human Protein AtlasENSG00000170631
Peptide AtlasP17020
HPRD03163
IPIIPI00299749   IPI00930110   IPI00977649   IPI00976075   IPI00977044   
Protein Interaction databases
DIP (DOE-UCLA)P17020
IntAct (EBI)P17020
FunCoupENSG00000170631
BioGRIDZNF16
STRING (EMBL)ZNF16
ZODIACZNF16
Ontologies - Pathways
QuickGOP17020
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  positive regulation of cell proliferation  positive regulation of kinase activity  negative regulation of apoptotic process  positive regulation of erythrocyte differentiation  positive regulation of megakaryocyte differentiation  metal ion binding  cell division  positive regulation of cell division  cellular response to sodium dodecyl sulfate  positive regulation of cell cycle phase transition  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  cell cycle  positive regulation of cell proliferation  positive regulation of kinase activity  negative regulation of apoptotic process  positive regulation of erythrocyte differentiation  positive regulation of megakaryocyte differentiation  metal ion binding  cell division  positive regulation of cell division  cellular response to sodium dodecyl sulfate  positive regulation of cell cycle phase transition  
NDEx NetworkZNF16
Atlas of Cancer Signalling NetworkZNF16
Wikipedia pathwaysZNF16
Orthology - Evolution
OrthoDB7564
GeneTree (enSembl)ENSG00000170631
Phylogenetic Trees/Animal Genes : TreeFamZNF16
HOVERGENP17020
HOGENOMP17020
Homologs : HomoloGeneZNF16
Homology/Alignments : Family Browser (UCSC)ZNF16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF16
dbVarZNF16
ClinVarZNF16
1000_GenomesZNF16 
Exome Variant ServerZNF16
ExAC (Exome Aggregation Consortium)ZNF16 (select the gene name)
Genetic variants : HAPMAP7564
Genomic Variants (DGV)ZNF16 [DGVbeta]
DECIPHER (Syndromes)8:146155744-146176274  ENSG00000170631
CONAN: Copy Number AnalysisZNF16 
Mutations
ICGC Data PortalZNF16 
TCGA Data PortalZNF16 
Broad Tumor PortalZNF16
OASIS PortalZNF16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF16
DgiDB (Drug Gene Interaction Database)ZNF16
DoCM (Curated mutations)ZNF16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF16 (select a term)
intoGenZNF16
Cancer3DZNF16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601262   
Orphanet
MedgenZNF16
Genetic Testing Registry ZNF16
NextProtP17020 [Medical]
TSGene7564
GENETestsZNF16
Huge Navigator ZNF16 [HugePedia]
snp3D : Map Gene to Disease7564
BioCentury BCIQZNF16
ClinGenZNF16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7564
Chemical/Pharm GKB GenePA37530
Clinical trialZNF16
Miscellaneous
canSAR (ICR)ZNF16 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF16
EVEXZNF16
GoPubMedZNF16
iHOPZNF16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:57 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.