Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF160 (zinc finger protein 160)

Identity

Alias_symbol (synonym)HZF5
F11
KR18
HKr18
FLJ00032
KIAA1611
Other alias
HGNC (Hugo) ZNF160
LocusID (NCBI) 90338
Atlas_Id 76004
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 53066614 and ends at 53103434 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		LRRC75A-AS1 (17p11.2) / ZNF160 (19q13.41)ZNF160 (19q13.41) / UBAP2 (9p13.3)ZNF160 (19q13.41) / ZNF160 (19q13.41)
ZNF160 (19q13.41) / ZNF521 (18q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF160   12948
Cards
Entrez_Gene (NCBI)ZNF160  90338  zinc finger protein 160
AliasesF11; HKr18; HZF5; KR18
GeneCards (Weizmann)ZNF160
Ensembl hg19 (Hinxton)ENSG00000170949 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170949 [Gene_View]  chr19:53066614-53103434 [Contig_View]  ZNF160 [Vega]
ICGC DataPortalENSG00000170949
TCGA cBioPortalZNF160
AceView (NCBI)ZNF160
Genatlas (Paris)ZNF160
WikiGenes90338
SOURCE (Princeton)ZNF160
Genetics Home Reference (NIH)ZNF160
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF160  -     chr19:53066614-53103434 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF160  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF160 - 19q13.41 [CytoView hg19]  ZNF160 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF160 [Mapview hg19]  ZNF160 [Mapview hg38]
OMIM600398   
Gene and transcription
Genbank (Entrez)AB046831 AF027144 AF277623 AK024442 AK024789
RefSeq transcript (Entrez)NM_001102603 NM_001322125 NM_001322126 NM_001322128 NM_001322129 NM_001322130 NM_001322131 NM_001322132 NM_001322133 NM_001322134 NM_001322135 NM_001322136 NM_001322137 NM_001322138 NM_001322139 NM_033288 NM_198893
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF160
Cluster EST : UnigeneHs.655967 [ NCBI ]
CGAP (NCI)Hs.655967
Alternative Splicing GalleryENSG00000170949
Gene ExpressionZNF160 [ NCBI-GEO ]   ZNF160 [ EBI - ARRAY_EXPRESS ]   ZNF160 [ SEEK ]   ZNF160 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF160 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90338
GTEX Portal (Tissue expression)ZNF160
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCG1
Splice isoforms : SwissVarQ9HCG1
PhosPhoSitePlusQ9HCG1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_C2H2_Znf_fam    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF160
DMDM Disease mutations90338
Blocks (Seattle)ZNF160
SuperfamilyQ9HCG1
Human Protein AtlasENSG00000170949
Peptide AtlasQ9HCG1
HPRD11856
IPIIPI00028833   IPI00386846   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCG1
IntAct (EBI)Q9HCG1
FunCoupENSG00000170949
BioGRIDZNF160
STRING (EMBL)ZNF160
ZODIACZNF160
Ontologies - Pathways
QuickGOQ9HCG1
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  hemopoiesis  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  hemopoiesis  metal ion binding  
NDEx NetworkZNF160
Atlas of Cancer Signalling NetworkZNF160
Wikipedia pathwaysZNF160
Orthology - Evolution
OrthoDB90338
GeneTree (enSembl)ENSG00000170949
Phylogenetic Trees/Animal Genes : TreeFamZNF160
HOVERGENQ9HCG1
HOGENOMQ9HCG1
Homologs : HomoloGeneZNF160
Homology/Alignments : Family Browser (UCSC)ZNF160
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF160 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF160
dbVarZNF160
ClinVarZNF160
1000_GenomesZNF160 
Exome Variant ServerZNF160
ExAC (Exome Aggregation Consortium)ZNF160 (select the gene name)
Genetic variants : HAPMAP90338
Genomic Variants (DGV)ZNF160 [DGVbeta]
DECIPHERZNF160 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF160 
Mutations
ICGC Data PortalZNF160 
TCGA Data PortalZNF160 
Broad Tumor PortalZNF160
OASIS PortalZNF160 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF160  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF160
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF160
DgiDB (Drug Gene Interaction Database)ZNF160
DoCM (Curated mutations)ZNF160 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF160 (select a term)
intoGenZNF160
Cancer3DZNF160(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600398   
Orphanet
MedgenZNF160
Genetic Testing Registry ZNF160
NextProtQ9HCG1 [Medical]
TSGene90338
GENETestsZNF160
Target ValidationZNF160
Huge Navigator ZNF160 [HugePedia]
snp3D : Map Gene to Disease90338
BioCentury BCIQZNF160
ClinGenZNF160
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90338
Chemical/Pharm GKB GenePA37531
Clinical trialZNF160
Miscellaneous
canSAR (ICR)ZNF160 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF160
EVEXZNF160
GoPubMedZNF160
iHOPZNF160
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:26 CEST 2017
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