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ZNF165 (zinc finger protein 165)

Identity

Alias_symbol (synonym)ZSCAN7
CT53
Other aliasLD65
HGNC (Hugo) ZNF165
LocusID (NCBI) 7718
Atlas_Id 55310
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28080704 and ends at 28089562 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF165   12953
Cards
Entrez_Gene (NCBI)ZNF165  7718  zinc finger protein 165
AliasesCT53; LD65; ZSCAN7
GeneCards (Weizmann)ZNF165
Ensembl hg19 (Hinxton)ENSG00000197279 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197279 [Gene_View]  ENSG00000197279 [Sequence]  chr6:28080704-28089562 [Contig_View]  ZNF165 [Vega]
ICGC DataPortalENSG00000197279
TCGA cBioPortalZNF165
AceView (NCBI)ZNF165
Genatlas (Paris)ZNF165
WikiGenes7718
SOURCE (Princeton)ZNF165
Genetics Home Reference (NIH)ZNF165
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF165  -     chr6:28080704-28089562 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF165  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF165 - 6p22.1 [CytoView hg19]  ZNF165 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF165 [Mapview hg19]  ZNF165 [Mapview hg38]
OMIM600834   
Gene and transcription
Genbank (Entrez)AK292371 AL546097 AL583605 AY083664 AY366500
RefSeq transcript (Entrez)NM_003447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF165
Cluster EST : UnigeneHs.55481 [ NCBI ]
CGAP (NCI)Hs.55481
Alternative Splicing GalleryENSG00000197279
Gene ExpressionZNF165 [ NCBI-GEO ]   ZNF165 [ EBI - ARRAY_EXPRESS ]   ZNF165 [ SEEK ]   ZNF165 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF165 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7718
GTEX Portal (Tissue expression)ZNF165
Human Protein AtlasENSG00000197279-ZNF165 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49910
Splice isoforms : SwissVarP49910
PhosPhoSitePlusP49910
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF165
DMDM Disease mutations7718
Blocks (Seattle)ZNF165
SuperfamilyP49910
Human Protein Atlas [tissue]ENSG00000197279-ZNF165 [tissue]
Peptide AtlasP49910
HPRD02903
IPIIPI00029075   
Protein Interaction databases
DIP (DOE-UCLA)P49910
IntAct (EBI)P49910
FunCoupENSG00000197279
BioGRIDZNF165
STRING (EMBL)ZNF165
ZODIACZNF165
Ontologies - Pathways
QuickGOP49910
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF165
Atlas of Cancer Signalling NetworkZNF165
Wikipedia pathwaysZNF165
Orthology - Evolution
OrthoDB7718
GeneTree (enSembl)ENSG00000197279
Phylogenetic Trees/Animal Genes : TreeFamZNF165
HOVERGENP49910
HOGENOMP49910
Homologs : HomoloGeneZNF165
Homology/Alignments : Family Browser (UCSC)ZNF165
Gene fusions - Rearrangements
Fusion : QuiverZNF165
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF165 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF165
dbVarZNF165
ClinVarZNF165
1000_GenomesZNF165 
Exome Variant ServerZNF165
ExAC (Exome Aggregation Consortium)ENSG00000197279
GNOMAD BrowserENSG00000197279
Varsome BrowserZNF165
Genetic variants : HAPMAP7718
Genomic Variants (DGV)ZNF165 [DGVbeta]
DECIPHERZNF165 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF165 
Mutations
ICGC Data PortalZNF165 
TCGA Data PortalZNF165 
Broad Tumor PortalZNF165
OASIS PortalZNF165 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF165  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF165
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF165
DgiDB (Drug Gene Interaction Database)ZNF165
DoCM (Curated mutations)ZNF165 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF165 (select a term)
intoGenZNF165
Cancer3DZNF165(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600834   
Orphanet
DisGeNETZNF165
MedgenZNF165
Genetic Testing Registry ZNF165
NextProtP49910 [Medical]
TSGene7718
GENETestsZNF165
Target ValidationZNF165
Huge Navigator ZNF165 [HugePedia]
snp3D : Map Gene to Disease7718
BioCentury BCIQZNF165
ClinGenZNF165
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7718
Chemical/Pharm GKB GenePA37535
Clinical trialZNF165
Miscellaneous
canSAR (ICR)ZNF165 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF165
EVEXZNF165
GoPubMedZNF165
iHOPZNF165
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:51:16 CET 2018

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