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ZNF17 (zinc finger protein 17)

Identity

Alias_nameszinc finger protein 17 (HPF3, KOX 10)
Alias_symbol (synonym)HPF3
KOX10
KIAA1947
FLJ40864
FLJ46058
FLJ46615
Other alias
HGNC (Hugo) ZNF17
LocusID (NCBI) 7565
Atlas_Id 76007
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57411147 and ends at 57421939 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF17   12958
Cards
Entrez_Gene (NCBI)ZNF17  7565  zinc finger protein 17
AliasesHPF3; KOX10
GeneCards (Weizmann)ZNF17
Ensembl hg19 (Hinxton)ENSG00000186272 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186272 [Gene_View]  chr19:57411147-57421939 [Contig_View]  ZNF17 [Vega]
ICGC DataPortalENSG00000186272
TCGA cBioPortalZNF17
AceView (NCBI)ZNF17
Genatlas (Paris)ZNF17
WikiGenes7565
SOURCE (Princeton)ZNF17
Genetics Home Reference (NIH)ZNF17
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF17  -     chr19:57411147-57421939 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF17  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF17 - 19q13.43 [CytoView hg19]  ZNF17 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF17 [Mapview hg19]  ZNF17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075827 AK097123 AK098183 AK127948 AK128471
RefSeq transcript (Entrez)NM_001330617 NM_006959
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF17
Cluster EST : UnigeneHs.729403 [ NCBI ]
CGAP (NCI)Hs.729403
Alternative Splicing GalleryENSG00000186272
Gene ExpressionZNF17 [ NCBI-GEO ]   ZNF17 [ EBI - ARRAY_EXPRESS ]   ZNF17 [ SEEK ]   ZNF17 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7565
GTEX Portal (Tissue expression)ZNF17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17021   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17021  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17021
Splice isoforms : SwissVarP17021
PhosPhoSitePlusP17021
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF17
DMDM Disease mutations7565
Blocks (Seattle)ZNF17
SuperfamilyP17021
Human Protein AtlasENSG00000186272
Peptide AtlasP17021
HPRD18323
IPIIPI00413807   IPI00647959   IPI00923508   
Protein Interaction databases
DIP (DOE-UCLA)P17021
IntAct (EBI)P17021
FunCoupENSG00000186272
BioGRIDZNF17
STRING (EMBL)ZNF17
ZODIACZNF17
Ontologies - Pathways
QuickGOP17021
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF17
Atlas of Cancer Signalling NetworkZNF17
Wikipedia pathwaysZNF17
Orthology - Evolution
OrthoDB7565
GeneTree (enSembl)ENSG00000186272
Phylogenetic Trees/Animal Genes : TreeFamZNF17
HOVERGENP17021
HOGENOMP17021
Homologs : HomoloGeneZNF17
Homology/Alignments : Family Browser (UCSC)ZNF17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF17
dbVarZNF17
ClinVarZNF17
1000_GenomesZNF17 
Exome Variant ServerZNF17
ExAC (Exome Aggregation Consortium)ZNF17 (select the gene name)
Genetic variants : HAPMAP7565
Genomic Variants (DGV)ZNF17 [DGVbeta]
DECIPHERZNF17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF17 
Mutations
ICGC Data PortalZNF17 
TCGA Data PortalZNF17 
Broad Tumor PortalZNF17
OASIS PortalZNF17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF17
DgiDB (Drug Gene Interaction Database)ZNF17
DoCM (Curated mutations)ZNF17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF17 (select a term)
intoGenZNF17
Cancer3DZNF17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF17
Genetic Testing Registry ZNF17
NextProtP17021 [Medical]
TSGene7565
GENETestsZNF17
Huge Navigator ZNF17 [HugePedia]
snp3D : Map Gene to Disease7565
BioCentury BCIQZNF17
ClinGenZNF17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7565
Chemical/Pharm GKB GenePA37540
Clinical trialZNF17
Miscellaneous
canSAR (ICR)ZNF17 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF17
EVEXZNF17
GoPubMedZNF17
iHOPZNF17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:30 CEST 2017

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