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ZNF175 (zinc finger protein 175)

Identity

Alias_symbol (synonym)OTK18
Other alias
HGNC (Hugo) ZNF175
LocusID (NCBI) 7728
Atlas_Id 76009
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51571237 and ends at 51589738 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF175 (19q13.41) / CYP27B1 (12q14.1)ZNF175 (19q13.41) / ZNF175 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF175   12964
Cards
Entrez_Gene (NCBI)ZNF175  7728  zinc finger protein 175
AliasesOTK18
GeneCards (Weizmann)ZNF175
Ensembl hg19 (Hinxton)ENSG00000105497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105497 [Gene_View]  chr19:51571237-51589738 [Contig_View]  ZNF175 [Vega]
ICGC DataPortalENSG00000105497
TCGA cBioPortalZNF175
AceView (NCBI)ZNF175
Genatlas (Paris)ZNF175
WikiGenes7728
SOURCE (Princeton)ZNF175
Genetics Home Reference (NIH)ZNF175
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF175  -     chr19:51571237-51589738 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF175  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF175 - 19q13.41 [CytoView hg19]  ZNF175 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF175 [Mapview hg19]  ZNF175 [Mapview hg38]
OMIM601139   
Gene and transcription
Genbank (Entrez)AI221738 AK292687 AW500087 BC007778 BC052997
RefSeq transcript (Entrez)NM_007147
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF175
Cluster EST : UnigeneHs.119014 [ NCBI ]
CGAP (NCI)Hs.119014
Alternative Splicing GalleryENSG00000105497
Gene ExpressionZNF175 [ NCBI-GEO ]   ZNF175 [ EBI - ARRAY_EXPRESS ]   ZNF175 [ SEEK ]   ZNF175 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF175 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7728
GTEX Portal (Tissue expression)ZNF175
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y473   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y473  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y473
Splice isoforms : SwissVarQ9Y473
PhosPhoSitePlusQ9Y473
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF175
DMDM Disease mutations7728
Blocks (Seattle)ZNF175
SuperfamilyQ9Y473
Human Protein AtlasENSG00000105497
Peptide AtlasQ9Y473
HPRD03088
IPIIPI00000388   IPI01011424   IPI01012239   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y473
IntAct (EBI)Q9Y473
FunCoupENSG00000105497
BioGRIDZNF175
STRING (EMBL)ZNF175
ZODIACZNF175
Ontologies - Pathways
QuickGOQ9Y473
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  intermediate filament cytoskeleton  metal ion binding  defense response to virus  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  intermediate filament cytoskeleton  metal ion binding  defense response to virus  
NDEx NetworkZNF175
Atlas of Cancer Signalling NetworkZNF175
Wikipedia pathwaysZNF175
Orthology - Evolution
OrthoDB7728
GeneTree (enSembl)ENSG00000105497
Phylogenetic Trees/Animal Genes : TreeFamZNF175
HOVERGENQ9Y473
HOGENOMQ9Y473
Homologs : HomoloGeneZNF175
Homology/Alignments : Family Browser (UCSC)ZNF175
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF175 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF175
dbVarZNF175
ClinVarZNF175
1000_GenomesZNF175 
Exome Variant ServerZNF175
ExAC (Exome Aggregation Consortium)ZNF175 (select the gene name)
Genetic variants : HAPMAP7728
Genomic Variants (DGV)ZNF175 [DGVbeta]
DECIPHERZNF175 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF175 
Mutations
ICGC Data PortalZNF175 
TCGA Data PortalZNF175 
Broad Tumor PortalZNF175
OASIS PortalZNF175 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF175  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF175
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF175
DgiDB (Drug Gene Interaction Database)ZNF175
DoCM (Curated mutations)ZNF175 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF175 (select a term)
intoGenZNF175
Cancer3DZNF175(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601139   
Orphanet
MedgenZNF175
Genetic Testing Registry ZNF175
NextProtQ9Y473 [Medical]
TSGene7728
GENETestsZNF175
Target ValidationZNF175
Huge Navigator ZNF175 [HugePedia]
snp3D : Map Gene to Disease7728
BioCentury BCIQZNF175
ClinGenZNF175
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7728
Chemical/Pharm GKB GenePA37546
Clinical trialZNF175
Miscellaneous
canSAR (ICR)ZNF175 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF175
EVEXZNF175
GoPubMedZNF175
iHOPZNF175
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:57 CEST 2017

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