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ZNF18 (zinc finger protein 18)

Identity

Alias_nameszinc finger protein 18 (KOX 11)
Alias_symbol (synonym)ZKSCAN6
KOX11
HDSG1
Zfp535
ZNF535
ZSCAN38
Other alias
HGNC (Hugo) ZNF18
LocusID (NCBI) 7566
Atlas_Id 76011
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 11977439 and ends at 11997510 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF18 (17p12) / TASP1 (20p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF18   12969
Cards
Entrez_Gene (NCBI)ZNF18  7566  zinc finger protein 18
AliasesHDSG1; KOX11; ZKSCAN6; ZNF535; 
ZSCAN38; Zfp535
GeneCards (Weizmann)ZNF18
Ensembl hg19 (Hinxton)ENSG00000154957 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154957 [Gene_View]  chr17:11977439-11997510 [Contig_View]  ZNF18 [Vega]
ICGC DataPortalENSG00000154957
TCGA cBioPortalZNF18
AceView (NCBI)ZNF18
Genatlas (Paris)ZNF18
WikiGenes7566
SOURCE (Princeton)ZNF18
Genetics Home Reference (NIH)ZNF18
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF18  -     chr17:11977439-11997510 -  17p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF18  -     17p12   [Description]    (hg19-Feb_2009)
EnsemblZNF18 - 17p12 [CytoView hg19]  ZNF18 - 17p12 [CytoView hg38]
Mapping of homologs : NCBIZNF18 [Mapview hg19]  ZNF18 [Mapview hg38]
OMIM194524   
Gene and transcription
Genbank (Entrez)AA243557 AK057783 AK092656 AK127908 AY491053
RefSeq transcript (Entrez)NM_001303281 NM_001303282 NM_144680
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF18
Cluster EST : UnigeneHs.370473 [ NCBI ]
CGAP (NCI)Hs.370473
Alternative Splicing GalleryENSG00000154957
Gene ExpressionZNF18 [ NCBI-GEO ]   ZNF18 [ EBI - ARRAY_EXPRESS ]   ZNF18 [ SEEK ]   ZNF18 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7566
GTEX Portal (Tissue expression)ZNF18
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17022   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17022  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17022
Splice isoforms : SwissVarP17022
PhosPhoSitePlusP17022
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    KRAB    Retrov_capsid_C    SCAN_dom    Zfp18    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF18
DMDM Disease mutations7566
Blocks (Seattle)ZNF18
SuperfamilyP17022
Human Protein AtlasENSG00000154957
Peptide AtlasP17022
HPRD01913
IPIIPI00375259   IPI00658106   IPI00387059   
Protein Interaction databases
DIP (DOE-UCLA)P17022
IntAct (EBI)P17022
FunCoupENSG00000154957
BioGRIDZNF18
STRING (EMBL)ZNF18
ZODIACZNF18
Ontologies - Pathways
QuickGOP17022
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF18
Atlas of Cancer Signalling NetworkZNF18
Wikipedia pathwaysZNF18
Orthology - Evolution
OrthoDB7566
GeneTree (enSembl)ENSG00000154957
Phylogenetic Trees/Animal Genes : TreeFamZNF18
HOVERGENP17022
HOGENOMP17022
Homologs : HomoloGeneZNF18
Homology/Alignments : Family Browser (UCSC)ZNF18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF18
dbVarZNF18
ClinVarZNF18
1000_GenomesZNF18 
Exome Variant ServerZNF18
ExAC (Exome Aggregation Consortium)ZNF18 (select the gene name)
Genetic variants : HAPMAP7566
Genomic Variants (DGV)ZNF18 [DGVbeta]
DECIPHERZNF18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF18 
Mutations
ICGC Data PortalZNF18 
TCGA Data PortalZNF18 
Broad Tumor PortalZNF18
OASIS PortalZNF18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF18
DgiDB (Drug Gene Interaction Database)ZNF18
DoCM (Curated mutations)ZNF18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF18 (select a term)
intoGenZNF18
Cancer3DZNF18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194524   
Orphanet
MedgenZNF18
Genetic Testing Registry ZNF18
NextProtP17022 [Medical]
TSGene7566
GENETestsZNF18
Target ValidationZNF18
Huge Navigator ZNF18 [HugePedia]
snp3D : Map Gene to Disease7566
BioCentury BCIQZNF18
ClinGenZNF18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7566
Chemical/Pharm GKB GenePA37551
Clinical trialZNF18
Miscellaneous
canSAR (ICR)ZNF18 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF18
EVEXZNF18
GoPubMedZNF18
iHOPZNF18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:57 CEST 2017

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