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ZNF180 (zinc finger protein 180)

Identity

Alias_nameszinc finger protein 180 (HHZ168)
Alias_symbol (synonym)HHZ168
Other alias
HGNC (Hugo) ZNF180
LocusID (NCBI) 7733
Atlas_Id 53671
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44978645 and ends at 45004575 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF180 (19q13.31) / ZNF180 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF180   12970
Cards
Entrez_Gene (NCBI)ZNF180  7733  zinc finger protein 180
AliasesHHZ168
GeneCards (Weizmann)ZNF180
Ensembl hg19 (Hinxton)ENSG00000167384 [Gene_View]  chr19:44978645-45004575 [Contig_View]  ZNF180 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167384 [Gene_View]  chr19:44978645-45004575 [Contig_View]  ZNF180 [Vega]
ICGC DataPortalENSG00000167384
TCGA cBioPortalZNF180
AceView (NCBI)ZNF180
Genatlas (Paris)ZNF180
WikiGenes7733
SOURCE (Princeton)ZNF180
Genetics Home Reference (NIH)ZNF180
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF180  -     chr19:44978645-45004575 -  19q13.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF180  -     19q13.31   [Description]    (hg38-Dec_2013)
EnsemblZNF180 - 19q13.31 [CytoView hg19]  ZNF180 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF180 [Mapview hg19]  ZNF180 [Mapview hg38]
OMIM606740   
Gene and transcription
Genbank (Entrez)AA835661 AF192913 AI472318 AK024047 AK122688
RefSeq transcript (Entrez)NM_001278508 NM_001278509 NM_001288759 NM_001288760 NM_001288761 NM_001288762 NM_001291633 NM_013256
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF180
Cluster EST : UnigeneHs.737614 [ NCBI ]
CGAP (NCI)Hs.737614
Alternative Splicing GalleryENSG00000167384
Gene ExpressionZNF180 [ NCBI-GEO ]   ZNF180 [ EBI - ARRAY_EXPRESS ]   ZNF180 [ SEEK ]   ZNF180 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF180 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7733
GTEX Portal (Tissue expression)ZNF180
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJW8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJW8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJW8
Splice isoforms : SwissVarQ9UJW8
PhosPhoSitePlusQ9UJW8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF180
DMDM Disease mutations7733
Blocks (Seattle)ZNF180
SuperfamilyQ9UJW8
Human Protein AtlasENSG00000167384
Peptide AtlasQ9UJW8
HPRD08414
IPIIPI00001684   IPI01010104   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJW8
IntAct (EBI)Q9UJW8
FunCoupENSG00000167384
BioGRIDZNF180
STRING (EMBL)ZNF180
ZODIACZNF180
Ontologies - Pathways
QuickGOQ9UJW8
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF180
Atlas of Cancer Signalling NetworkZNF180
Wikipedia pathwaysZNF180
Orthology - Evolution
OrthoDB7733
GeneTree (enSembl)ENSG00000167384
Phylogenetic Trees/Animal Genes : TreeFamZNF180
HOVERGENQ9UJW8
HOGENOMQ9UJW8
Homologs : HomoloGeneZNF180
Homology/Alignments : Family Browser (UCSC)ZNF180
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF180 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF180
dbVarZNF180
ClinVarZNF180
1000_GenomesZNF180 
Exome Variant ServerZNF180
ExAC (Exome Aggregation Consortium)ZNF180 (select the gene name)
Genetic variants : HAPMAP7733
Genomic Variants (DGV)ZNF180 [DGVbeta]
DECIPHER (Syndromes)19:44978645-45004575  ENSG00000167384
CONAN: Copy Number AnalysisZNF180 
Mutations
ICGC Data PortalZNF180 
TCGA Data PortalZNF180 
Broad Tumor PortalZNF180
OASIS PortalZNF180 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF180  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF180
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF180
DgiDB (Drug Gene Interaction Database)ZNF180
DoCM (Curated mutations)ZNF180 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF180 (select a term)
intoGenZNF180
Cancer3DZNF180(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606740   
Orphanet
MedgenZNF180
Genetic Testing Registry ZNF180
NextProtQ9UJW8 [Medical]
TSGene7733
GENETestsZNF180
Huge Navigator ZNF180 [HugePedia]
snp3D : Map Gene to Disease7733
BioCentury BCIQZNF180
ClinGenZNF180
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7733
Chemical/Pharm GKB GenePA37552
Clinical trialZNF180
Miscellaneous
canSAR (ICR)ZNF180 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF180
EVEXZNF180
GoPubMedZNF180
iHOPZNF180
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:34:57 CET 2017

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