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ZNF185 (zinc finger protein 185 with LIM domain)

Identity

Alias_symbol (synonym)SCELL
Other alias
HGNC (Hugo) ZNF185
LocusID (NCBI) 7739
Atlas_Id 43836
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 152914442 and ends at 152973481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF185 (Xq28) / B2M (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF185   12976
Cards
Entrez_Gene (NCBI)ZNF185  7739  zinc finger protein 185 with LIM domain
AliasesSCELL
GeneCards (Weizmann)ZNF185
Ensembl hg19 (Hinxton)ENSG00000147394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147394 [Gene_View]  chrX:152914442-152973481 [Contig_View]  ZNF185 [Vega]
ICGC DataPortalENSG00000147394
TCGA cBioPortalZNF185
AceView (NCBI)ZNF185
Genatlas (Paris)ZNF185
WikiGenes7739
SOURCE (Princeton)ZNF185
Genetics Home Reference (NIH)ZNF185
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF185  -     chrX:152914442-152973481 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF185  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblZNF185 - Xq28 [CytoView hg19]  ZNF185 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIZNF185 [Mapview hg19]  ZNF185 [Mapview hg38]
OMIM300381   
Gene and transcription
Genbank (Entrez)AK056517 AK095258 AK296967 AK301530 AK304323
RefSeq transcript (Entrez)NM_001178106 NM_001178107 NM_001178108 NM_001178109 NM_001178110 NM_001178113 NM_001178114 NM_001178115 NM_007150
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF185
Cluster EST : UnigeneHs.16622 [ NCBI ]
CGAP (NCI)Hs.16622
Alternative Splicing GalleryENSG00000147394
Gene ExpressionZNF185 [ NCBI-GEO ]   ZNF185 [ EBI - ARRAY_EXPRESS ]   ZNF185 [ SEEK ]   ZNF185 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF185 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7739
GTEX Portal (Tissue expression)ZNF185
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15231   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15231  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15231
Splice isoforms : SwissVarO15231
PhosPhoSitePlusO15231
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)ZNF185
DMDM Disease mutations7739
Blocks (Seattle)ZNF185
SuperfamilyO15231
Human Protein AtlasENSG00000147394
Peptide AtlasO15231
HPRD02306
IPIIPI00005688   IPI00647837   IPI00641065   IPI00939196   IPI00385027   IPI00970888   IPI00921909   IPI00646811   IPI00976635   IPI00983516   IPI00984089   IPI00166240   IPI00645454   
Protein Interaction databases
DIP (DOE-UCLA)O15231
IntAct (EBI)O15231
FunCoupENSG00000147394
BioGRIDZNF185
STRING (EMBL)ZNF185
ZODIACZNF185
Ontologies - Pathways
QuickGOO15231
Ontology : AmiGOcytoplasm  cytoskeleton  focal adhesion  zinc ion binding  
Ontology : EGO-EBIcytoplasm  cytoskeleton  focal adhesion  zinc ion binding  
NDEx NetworkZNF185
Atlas of Cancer Signalling NetworkZNF185
Wikipedia pathwaysZNF185
Orthology - Evolution
OrthoDB7739
GeneTree (enSembl)ENSG00000147394
Phylogenetic Trees/Animal Genes : TreeFamZNF185
HOVERGENO15231
HOGENOMO15231
Homologs : HomoloGeneZNF185
Homology/Alignments : Family Browser (UCSC)ZNF185
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF185 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF185
dbVarZNF185
ClinVarZNF185
1000_GenomesZNF185 
Exome Variant ServerZNF185
ExAC (Exome Aggregation Consortium)ZNF185 (select the gene name)
Genetic variants : HAPMAP7739
Genomic Variants (DGV)ZNF185 [DGVbeta]
DECIPHERZNF185 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF185 
Mutations
ICGC Data PortalZNF185 
TCGA Data PortalZNF185 
Broad Tumor PortalZNF185
OASIS PortalZNF185 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF185  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF185
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZNF185
DgiDB (Drug Gene Interaction Database)ZNF185
DoCM (Curated mutations)ZNF185 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF185 (select a term)
intoGenZNF185
Cancer3DZNF185(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300381   
Orphanet
MedgenZNF185
Genetic Testing Registry ZNF185
NextProtO15231 [Medical]
TSGene7739
GENETestsZNF185
Huge Navigator ZNF185 [HugePedia]
snp3D : Map Gene to Disease7739
BioCentury BCIQZNF185
ClinGenZNF185
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7739
Chemical/Pharm GKB GenePA37558
Clinical trialZNF185
Miscellaneous
canSAR (ICR)ZNF185 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF185
EVEXZNF185
GoPubMedZNF185
iHOPZNF185
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:53 CEST 2017

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