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ZNF189 (zinc finger protein 189)

Identity

Other alias-
HGNC (Hugo) ZNF189
LocusID (NCBI) 7743
Atlas_Id 76015
Location 9q31.1  [Link to chromosome band 9q31]
Location_base_pair Starts at 101398854 and ends at 101410660 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF189 (9q31.1) / BAAT (9q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF189   12980
Cards
Entrez_Gene (NCBI)ZNF189  7743  zinc finger protein 189
Aliases
GeneCards (Weizmann)ZNF189
Ensembl hg19 (Hinxton)ENSG00000136870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136870 [Gene_View]  chr9:101398854-101410660 [Contig_View]  ZNF189 [Vega]
ICGC DataPortalENSG00000136870
TCGA cBioPortalZNF189
AceView (NCBI)ZNF189
Genatlas (Paris)ZNF189
WikiGenes7743
SOURCE (Princeton)ZNF189
Genetics Home Reference (NIH)ZNF189
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF189  -     chr9:101398854-101410660 +  9q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF189  -     9q31.1   [Description]    (hg19-Feb_2009)
EnsemblZNF189 - 9q31.1 [CytoView hg19]  ZNF189 - 9q31.1 [CytoView hg38]
Mapping of homologs : NCBIZNF189 [Mapview hg19]  ZNF189 [Mapview hg38]
OMIM603132   
Gene and transcription
Genbank (Entrez)AF025770 AF025771 AK290163 AK308935 AK313655
RefSeq transcript (Entrez)NM_001278231 NM_001278232 NM_001278240 NM_003452 NM_197977
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF189
Cluster EST : UnigeneHs.50123 [ NCBI ]
CGAP (NCI)Hs.50123
Alternative Splicing GalleryENSG00000136870
Gene ExpressionZNF189 [ NCBI-GEO ]   ZNF189 [ EBI - ARRAY_EXPRESS ]   ZNF189 [ SEEK ]   ZNF189 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF189 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7743
GTEX Portal (Tissue expression)ZNF189
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75820   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75820  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75820
Splice isoforms : SwissVarO75820
PhosPhoSitePlusO75820
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF189
DMDM Disease mutations7743
Blocks (Seattle)ZNF189
SuperfamilyO75820
Human Protein AtlasENSG00000136870
Peptide AtlasO75820
HPRD11930
IPIIPI00027151   IPI00336044   IPI00221217   IPI00221218   
Protein Interaction databases
DIP (DOE-UCLA)O75820
IntAct (EBI)O75820
FunCoupENSG00000136870
BioGRIDZNF189
STRING (EMBL)ZNF189
ZODIACZNF189
Ontologies - Pathways
QuickGOO75820
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF189
Atlas of Cancer Signalling NetworkZNF189
Wikipedia pathwaysZNF189
Orthology - Evolution
OrthoDB7743
GeneTree (enSembl)ENSG00000136870
Phylogenetic Trees/Animal Genes : TreeFamZNF189
HOVERGENO75820
HOGENOMO75820
Homologs : HomoloGeneZNF189
Homology/Alignments : Family Browser (UCSC)ZNF189
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF189 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF189
dbVarZNF189
ClinVarZNF189
1000_GenomesZNF189 
Exome Variant ServerZNF189
ExAC (Exome Aggregation Consortium)ZNF189 (select the gene name)
Genetic variants : HAPMAP7743
Genomic Variants (DGV)ZNF189 [DGVbeta]
DECIPHERZNF189 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF189 
Mutations
ICGC Data PortalZNF189 
TCGA Data PortalZNF189 
Broad Tumor PortalZNF189
OASIS PortalZNF189 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF189  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF189
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF189
DgiDB (Drug Gene Interaction Database)ZNF189
DoCM (Curated mutations)ZNF189 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF189 (select a term)
intoGenZNF189
Cancer3DZNF189(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603132   
Orphanet
MedgenZNF189
Genetic Testing Registry ZNF189
NextProtO75820 [Medical]
TSGene7743
GENETestsZNF189
Target ValidationZNF189
Huge Navigator ZNF189 [HugePedia]
snp3D : Map Gene to Disease7743
BioCentury BCIQZNF189
ClinGenZNF189
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7743
Chemical/Pharm GKB GenePA37561
Clinical trialZNF189
Miscellaneous
canSAR (ICR)ZNF189 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF189
EVEXZNF189
GoPubMedZNF189
iHOPZNF189
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:27 CEST 2017

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