Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF19 (zinc finger protein 19)

Identity

Alias (NCBI)KOX12
HGNC (Hugo) ZNF19
HGNC Alias symbKOX12
MGC51021
HGNC Previous namezinc finger protein 19 (KOX 12)
LocusID (NCBI) 7567
Atlas_Id 76016
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71473583 and ends at 71489324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)ZNF19   12981
Cards
Entrez_Gene (NCBI)ZNF19    zinc finger protein 19
AliasesKOX12
GeneCards (Weizmann)ZNF19
Ensembl hg19 (Hinxton)ENSG00000157429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157429 [Gene_View]  ENSG00000157429 [Sequence]  chr16:71473583-71489324 [Contig_View]  ZNF19 [Vega]
ICGC DataPortalENSG00000157429
TCGA cBioPortalZNF19
AceView (NCBI)ZNF19
Genatlas (Paris)ZNF19
SOURCE (Princeton)ZNF19
Genetics Home Reference (NIH)ZNF19
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF19  -     chr16:71473583-71489324 -  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF19  -     16q22.2   [Description]    (hg19-Feb_2009)
GoldenPathZNF19 - 16q22.2 [CytoView hg19]  ZNF19 - 16q22.2 [CytoView hg38]
ImmunoBaseENSG00000157429
Genome Data Viewer NCBIZNF19 [Mapview hg19]  
OMIM194525   
Gene and transcription
Genbank (Entrez)AK055567 AK057330 AK292260 AK311003 AL834237
RefSeq transcript (Entrez)NM_006961
Consensus coding sequences : CCDS (NCBI)ZNF19
Gene ExpressionZNF19 [ NCBI-GEO ]   ZNF19 [ EBI - ARRAY_EXPRESS ]   ZNF19 [ SEEK ]   ZNF19 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF19 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF19 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7567
GTEX Portal (Tissue expression)ZNF19
Human Protein AtlasENSG00000157429-ZNF19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17023   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17023  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17023
PhosPhoSitePlusP17023
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF19
SuperfamilyP17023
AlphaFold pdb e-kbP17023   
Human Protein Atlas [tissue]ENSG00000157429-ZNF19 [tissue]
HPRD01914
Protein Interaction databases
DIP (DOE-UCLA)P17023
IntAct (EBI)P17023
BioGRIDZNF19
STRING (EMBL)ZNF19
ZODIACZNF19
Ontologies - Pathways
QuickGOP17023
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF19
Atlas of Cancer Signalling NetworkZNF19
Wikipedia pathwaysZNF19
Orthology - Evolution
OrthoDB7567
GeneTree (enSembl)ENSG00000157429
Phylogenetic Trees/Animal Genes : TreeFamZNF19
Homologs : HomoloGeneZNF19
Homology/Alignments : Family Browser (UCSC)ZNF19
Gene fusions - Rearrangements
Fusion : QuiverZNF19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF19
dbVarZNF19
ClinVarZNF19
MonarchZNF19
1000_GenomesZNF19 
Exome Variant ServerZNF19
GNOMAD BrowserENSG00000157429
Varsome BrowserZNF19
ACMGZNF19 variants
VarityP17023
Genomic Variants (DGV)ZNF19 [DGVbeta]
DECIPHERZNF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF19 
Mutations
ICGC Data PortalZNF19 
TCGA Data PortalZNF19 
Broad Tumor PortalZNF19
OASIS PortalZNF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF19  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF19
Mutations and Diseases : HGMDZNF19
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF19
DgiDB (Drug Gene Interaction Database)ZNF19
DoCM (Curated mutations)ZNF19
CIViC (Clinical Interpretations of Variants in Cancer)ZNF19
Cancer3DZNF19
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194525   
Orphanet
DisGeNETZNF19
MedgenZNF19
Genetic Testing Registry ZNF19
NextProtP17023 [Medical]
GENETestsZNF19
Target ValidationZNF19
Huge Navigator ZNF19 [HugePedia]
ClinGenZNF19
Clinical trials, drugs, therapy
MyCancerGenomeZNF19
Protein Interactions : CTDZNF19
Pharm GKB GenePA37562
PharosP17023
Clinical trialZNF19
Miscellaneous
canSAR (ICR)ZNF19
HarmonizomeZNF19
DataMed IndexZNF19
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:17 CEST 2021
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