Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF19 (zinc finger protein 19)

Identity

Alias_nameszinc finger protein 19 (KOX 12)
Alias_symbol (synonym)KOX12
MGC51021
Other alias
HGNC (Hugo) ZNF19
LocusID (NCBI) 7567
Atlas_Id 76016
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71474073 and ends at 71489351 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF19   12981
Cards
Entrez_Gene (NCBI)ZNF19  7567  zinc finger protein 19
AliasesKOX12
GeneCards (Weizmann)ZNF19
Ensembl hg19 (Hinxton)ENSG00000157429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157429 [Gene_View]  ENSG00000157429 [Sequence]  chr16:71474073-71489351 [Contig_View]  ZNF19 [Vega]
ICGC DataPortalENSG00000157429
TCGA cBioPortalZNF19
AceView (NCBI)ZNF19
Genatlas (Paris)ZNF19
WikiGenes7567
SOURCE (Princeton)ZNF19
Genetics Home Reference (NIH)ZNF19
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF19  -     chr16:71474073-71489351 -  16q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF19  -     16q22.2   [Description]    (hg19-Feb_2009)
EnsemblZNF19 - 16q22.2 [CytoView hg19]  ZNF19 - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBIZNF19 [Mapview hg19]  ZNF19 [Mapview hg38]
OMIM194525   
Gene and transcription
Genbank (Entrez)AK055567 AK057330 AK292260 AK311003 AL834237
RefSeq transcript (Entrez)NM_006961
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF19
Cluster EST : UnigeneHs.660076 [ NCBI ]
CGAP (NCI)Hs.660076
Alternative Splicing GalleryENSG00000157429
Gene ExpressionZNF19 [ NCBI-GEO ]   ZNF19 [ EBI - ARRAY_EXPRESS ]   ZNF19 [ SEEK ]   ZNF19 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7567
GTEX Portal (Tissue expression)ZNF19
Human Protein AtlasENSG00000157429-ZNF19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17023   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17023  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17023
Splice isoforms : SwissVarP17023
PhosPhoSitePlusP17023
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF19
DMDM Disease mutations7567
Blocks (Seattle)ZNF19
SuperfamilyP17023
Human Protein Atlas [tissue]ENSG00000157429-ZNF19 [tissue]
Peptide AtlasP17023
HPRD01914
IPIIPI00012358   IPI00643896   
Protein Interaction databases
DIP (DOE-UCLA)P17023
IntAct (EBI)P17023
FunCoupENSG00000157429
BioGRIDZNF19
STRING (EMBL)ZNF19
ZODIACZNF19
Ontologies - Pathways
QuickGOP17023
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF19
Atlas of Cancer Signalling NetworkZNF19
Wikipedia pathwaysZNF19
Orthology - Evolution
OrthoDB7567
GeneTree (enSembl)ENSG00000157429
Phylogenetic Trees/Animal Genes : TreeFamZNF19
HOGENOMP17023
Homologs : HomoloGeneZNF19
Homology/Alignments : Family Browser (UCSC)ZNF19
Gene fusions - Rearrangements
Fusion : QuiverZNF19
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF19
dbVarZNF19
ClinVarZNF19
1000_GenomesZNF19 
Exome Variant ServerZNF19
ExAC (Exome Aggregation Consortium)ENSG00000157429
GNOMAD BrowserENSG00000157429
Varsome BrowserZNF19
Genetic variants : HAPMAP7567
Genomic Variants (DGV)ZNF19 [DGVbeta]
DECIPHERZNF19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF19 
Mutations
ICGC Data PortalZNF19 
TCGA Data PortalZNF19 
Broad Tumor PortalZNF19
OASIS PortalZNF19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF19
DgiDB (Drug Gene Interaction Database)ZNF19
DoCM (Curated mutations)ZNF19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF19 (select a term)
intoGenZNF19
Cancer3DZNF19(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194525   
Orphanet
DisGeNETZNF19
MedgenZNF19
Genetic Testing Registry ZNF19
NextProtP17023 [Medical]
TSGene7567
GENETestsZNF19
Target ValidationZNF19
Huge Navigator ZNF19 [HugePedia]
snp3D : Map Gene to Disease7567
BioCentury BCIQZNF19
ClinGenZNF19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7567
Chemical/Pharm GKB GenePA37562
Clinical trialZNF19
Miscellaneous
canSAR (ICR)ZNF19 (select the gene name)
DataMed IndexZNF19
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF19
EVEXZNF19
GoPubMedZNF19
iHOPZNF19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Feb 14 16:13:15 CET 2019
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