Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF195 (zinc finger protein 195)

Identity

Other aliasHRF1
ZNFP104
HGNC (Hugo) ZNF195
LocusID (NCBI) 7748
Atlas_Id 55106
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 3357927 and ends at 3379222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF195 (11p15.4) / FAM160A2 (11p15.4)ZNF195 (11p15.4) / RPL36A (Xq22.1)ZNF195 11p15.4 / FAM160A2 11p15.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF195   12986
Cards
Entrez_Gene (NCBI)ZNF195  7748  zinc finger protein 195
AliasesHRF1; ZNFP104
GeneCards (Weizmann)ZNF195
Ensembl hg19 (Hinxton)ENSG00000005801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005801 [Gene_View]  chr11:3357927-3379222 [Contig_View]  ZNF195 [Vega]
ICGC DataPortalENSG00000005801
TCGA cBioPortalZNF195
AceView (NCBI)ZNF195
Genatlas (Paris)ZNF195
WikiGenes7748
SOURCE (Princeton)ZNF195
Genetics Home Reference (NIH)ZNF195
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF195  -     chr11:3357927-3379222 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF195  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblZNF195 - 11p15.4 [CytoView hg19]  ZNF195 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIZNF195 [Mapview hg19]  ZNF195 [Mapview hg38]
OMIM602187   
Gene and transcription
Genbank (Entrez)AB209664 AF003540 AF028728 AK095720 AK131296
RefSeq transcript (Entrez)NM_001130519 NM_001130520 NM_001242841 NM_001242842 NM_001242843 NM_001256823 NM_001256824 NM_001256825 NM_007152
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF195
Cluster EST : UnigeneHs.386294 [ NCBI ]
CGAP (NCI)Hs.386294
Alternative Splicing GalleryENSG00000005801
Gene ExpressionZNF195 [ NCBI-GEO ]   ZNF195 [ EBI - ARRAY_EXPRESS ]   ZNF195 [ SEEK ]   ZNF195 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF195 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7748
GTEX Portal (Tissue expression)ZNF195
Human Protein AtlasENSG00000005801-ZNF195 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14628   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14628  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14628
Splice isoforms : SwissVarO14628
PhosPhoSitePlusO14628
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF195
DMDM Disease mutations7748
Blocks (Seattle)ZNF195
SuperfamilyO14628
Human Protein Atlas [tissue]ENSG00000005801-ZNF195 [tissue]
Peptide AtlasO14628
HPRD03718
IPIIPI00747327   IPI00796632   IPI00470385   IPI00925378   IPI00442264   IPI00974314   IPI00978847   IPI00978906   IPI00797267   IPI00982738   IPI00977332   IPI00979592   IPI00985337   IPI00981587   IPI00978027   IPI00980987   IPI00975958   
Protein Interaction databases
DIP (DOE-UCLA)O14628
IntAct (EBI)O14628
FunCoupENSG00000005801
BioGRIDZNF195
STRING (EMBL)ZNF195
ZODIACZNF195
Ontologies - Pathways
QuickGOO14628
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF195
Atlas of Cancer Signalling NetworkZNF195
Wikipedia pathwaysZNF195
Orthology - Evolution
OrthoDB7748
GeneTree (enSembl)ENSG00000005801
Phylogenetic Trees/Animal Genes : TreeFamZNF195
HOVERGENO14628
HOGENOMO14628
Homologs : HomoloGeneZNF195
Homology/Alignments : Family Browser (UCSC)ZNF195
Gene fusions - Rearrangements
Fusion : MitelmanZNF195/FAM160A2 [11p15.4/11p15.4]  
Fusion: TCGA_MDACCZNF195 11p15.4 FAM160A2 11p15.4 OV
Tumor Fusion PortalZNF195
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF195 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF195
dbVarZNF195
ClinVarZNF195
1000_GenomesZNF195 
Exome Variant ServerZNF195
ExAC (Exome Aggregation Consortium)ENSG00000005801
GNOMAD BrowserENSG00000005801
Genetic variants : HAPMAP7748
Genomic Variants (DGV)ZNF195 [DGVbeta]
DECIPHERZNF195 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF195 
Mutations
ICGC Data PortalZNF195 
TCGA Data PortalZNF195 
Broad Tumor PortalZNF195
OASIS PortalZNF195 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF195  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF195
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch ZNF195
DgiDB (Drug Gene Interaction Database)ZNF195
DoCM (Curated mutations)ZNF195 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF195 (select a term)
intoGenZNF195
Cancer3DZNF195(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602187   
Orphanet
DisGeNETZNF195
MedgenZNF195
Genetic Testing Registry ZNF195
NextProtO14628 [Medical]
TSGene7748
GENETestsZNF195
Target ValidationZNF195
Huge Navigator ZNF195 [HugePedia]
snp3D : Map Gene to Disease7748
BioCentury BCIQZNF195
ClinGenZNF195
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7748
Chemical/Pharm GKB GenePA37566
Clinical trialZNF195
Miscellaneous
canSAR (ICR)ZNF195 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF195
EVEXZNF195
GoPubMedZNF195
iHOPZNF195
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:42:27 CET 2017

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