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ZNF197 (zinc finger protein 197)

Identity

Other namesD3S1363E
P18
VHLaK
ZKSCAN9
ZNF166
ZNF20
ZSCAN41
HGNC (Hugo) ZNF197
LocusID (NCBI) 10168
Location 3p21.31
Location_base_pair Starts at 44666511 and ends at 44689963 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF197   12988
Entrez_Gene (NCBI)ZNF197  10168  zinc finger protein 197
Cards
GeneCards (Weizmann)ZNF197
Ensembl (Hinxton)ENSG00000186448 [Gene_View]  chr3:44666511-44689963 [Contig_View]  ZNF197 [Vega]
AceView (NCBI)ZNF197
Genatlas (Paris)ZNF197
SOURCE (Stanford)NM_001024855 NM_006991
Genomic and cartography
GoldenPath (UCSC)ZNF197  -  3p21.31   chr3:44666511-44689963 +  3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF197 - 3p21.31 [CytoView]
Mapping of homologs : NCBIZNF197 [Mapview]
Gene and transcription
Genbank (Entrez)AF011573 AK314196 AY074878 AY261677 AY279353
RefSeq transcript (SRS)NM_001024855 NM_006991
RefSeq transcript (Entrez)NM_001024855 NM_006991
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)ZNF197
Cluster EST : UnigeneHs.157035 [ SRS ] Hs.157035 [ NCBI ]
CGAP (NCI)Hs.157035
Alternative Splicing : Fast-db (Paris)GSHG0020750
Alternative Splicing GalleryENSG00000186448
Gene ExpressionZNF197 [ NCBI-GEO ]   ZNF197 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14709 (SRS) O14709 (Uniprot)
NextProtO14709
With graphics : InterProO14709
Splice isoforms : SwissVarO14709(Swissvar)
Domaine pattern : Prosite (SRS)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Krueppel-associated_box    Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)Krueppel-associated_box    Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrO14709
Domain families : Pfam (SRS)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
DMDM10168
Blocks (Seattle)O14709
Human Protein AtlasENSG00000186448
HPRD10322
IPIIPI00023617   IPI01013120   IPI00383260   IPI00925861   IPI00744049   IPI00926304   
Protein Interaction databases
DIP (DOE-UCLA)O14709
IntAct (EBI)O14709
FunCoupENSG00000186448
REACTOMEZNF197
Protein Interaction Database10168
BioGRIDZNF197
InParanoidO14709
Interologous Interaction database O14709
IntegromeDBZNF197
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZNF197
SNP (GeneSNP Utah)ZNF197
SNP : HGBaseZNF197
Genetic variants : HAPMAPZNF197
Somatic Mutations in Cancer : COSMICZNF197 
CONAN: Copy Number AnalysisZNF197 
Mutations and Diseases : HGMDZNF197
OMIM
GENETests
Disease Genetic AssociationZNF197
Huge Navigator ZNF197 [HugePedia]  ZNF197 [HugeCancerGEM]
Genomic VariantsZNF197  ZNF197 [DGVbeta]
snp3D : Map Gene to Disease10168
General knowledge
Homologs : HomoloGeneZNF197
Homology/Alignments : Family Browser (UCSC)ZNF197
Phylogenetic Trees/Animal Genes : TreeFamZNF197
Chemical/Protein Interactions : CTD10168
Chemical/Pharm GKB GenePA37568
Clinical trialZNF197
Cancer Resource (Charite)ENSG00000186448
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  zinc ion binding  viral reproduction  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-dependent  zinc ion binding  viral reproduction  metal ion binding  
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGeneZNF197
iHOPZNF197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:40:36 CEST 2013
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