Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF197 (zinc finger protein 197)

Identity

Other namesD3S1363E
P18
VHLaK
ZKSCAN9
ZNF166
ZNF20
ZSCAN41
HGNC (Hugo) ZNF197
LocusID (NCBI) 10168
Atlas_Id 42873
Location 3p21.31
Location_base_pair Starts at 44666511 and ends at 44689963 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
ZNF197 3p21.31 / TAF3 10p14

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF197   12988
Cards
Entrez_Gene (NCBI)ZNF197  10168  zinc finger protein 197
GeneCards (Weizmann)ZNF197
Ensembl hg19 (Hinxton)ENSG00000186448 [Gene_View]  chr3:44666511-44689963 [Contig_View]  ZNF197 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186448 [Gene_View]  chr3:44666511-44689963 [Contig_View]  ZNF197 [Vega]
ICGC DataPortalENSG00000186448
TCGA cBioPortalZNF197
AceView (NCBI)ZNF197
Genatlas (Paris)ZNF197
WikiGenes10168
SOURCE (Princeton)ZNF197
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF197  -     chr3:44666511-44689963 +  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF197  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblZNF197 - 3p21.31 [CytoView hg19]  ZNF197 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF197 [Mapview hg19]  ZNF197 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF011573 AK314196 AL117657 AY074878 AY261677
RefSeq transcript (Entrez)NM_001024855 NM_006991
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309 NW_009646197
Consensus coding sequences : CCDS (NCBI)ZNF197
Cluster EST : UnigeneHs.157035 [ NCBI ]
CGAP (NCI)Hs.157035
Alternative Splicing : Fast-db (Paris)GSHG0020750
Alternative Splicing GalleryENSG00000186448
Gene ExpressionZNF197 [ NCBI-GEO ]     ZNF197 [ SEEK ]   ZNF197 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10168
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14709 (Uniprot)
NextProtO14709  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14709
Splice isoforms : SwissVarO14709 (Swissvar)
PhosPhoSitePlusO14709
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations10168
Blocks (Seattle)ZNF197
Human Protein AtlasENSG00000186448
Peptide AtlasO14709
HPRD10322
IPIIPI00023617   IPI01013120   IPI00383260   IPI00925861   IPI00744049   IPI00926304   
Protein Interaction databases
DIP (DOE-UCLA)O14709
IntAct (EBI)O14709
FunCoupENSG00000186448
BioGRIDZNF197
IntegromeDBZNF197
STRING (EMBL)ZNF197
ZODIACZNF197
Ontologies - Pathways
QuickGOO14709
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Protein Interaction DatabaseZNF197
Atlas of Cancer Signalling NetworkZNF197
Wikipedia pathwaysZNF197
Orthology - Evolution
OrthoDB10168
GeneTree (enSembl)ENSG00000186448
Phylogenetic Trees/Animal Genes : TreeFamZNF197
Homologs : HomoloGeneZNF197
Homology/Alignments : Family Browser (UCSC)ZNF197
Gene fusions - Rearrangements
Fusion: TCGAZNF197 3p21.31 TAF3 10p14 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerZNF197 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF197
dbVarZNF197
ClinVarZNF197
1000_GenomesZNF197 
Exome Variant ServerZNF197
Exome Aggregation Consortium (ExAC)ENSG00000186448
SNP (GeneSNP Utah)ZNF197
SNP : HGBaseZNF197
Genetic variants : HAPMAPZNF197
Genomic Variants (DGV)ZNF197 [DGVbeta]
Mutations
ICGC Data PortalZNF197 
TCGA Data PortalZNF197 
Tumor PortalZNF197
TCGA Copy Number PortalZNF197
Somatic Mutations in Cancer : COSMICZNF197 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF197
DgiDB (Drug Gene Interaction Database)ZNF197
DoCM (Curated mutations)ZNF197 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF197 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:44666511-44689963
CONAN: Copy Number AnalysisZNF197 
Mutations and Diseases : HGMDZNF197
OMIM
MedgenZNF197
NextProtO14709 [Medical]
TSGene10168
GENETestsZNF197
Huge Navigator ZNF197 [HugePedia]  ZNF197 [HugeCancerGEM]
snp3D : Map Gene to Disease10168
BioCentury BCIQZNF197
General knowledge
Chemical/Protein Interactions : CTD10168
Chemical/Pharm GKB GenePA37568
Clinical trialZNF197
Other databases
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF197
GoPubMedZNF197
iHOPZNF197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jan 16 19:46:42 CET 2016

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.