Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF197 (zinc finger protein 197)

Identity

Other namesD3S1363E
P18
VHLaK
ZKSCAN9
ZNF166
ZNF20
ZSCAN41
HGNC (Hugo) ZNF197
LocusID (NCBI) 10168
Location 3p21.31
Location_base_pair Starts at 44666511 and ends at 44689963 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF197   12988
Cards
Entrez_Gene (NCBI)ZNF197  10168  zinc finger protein 197
GeneCards (Weizmann)ZNF197
Ensembl (Hinxton)ENSG00000186448 [Gene_View]  chr3:44666511-44689963 [Contig_View]  ZNF197 [Vega]
ICGC DataPortalENSG00000186448
AceView (NCBI)ZNF197
Genatlas (Paris)ZNF197
WikiGenes10168
SOURCE (Princeton)NM_001024855 NM_006991
Genomic and cartography
GoldenPath (UCSC)ZNF197  -  3p21.31   chr3:44666511-44689963 +  3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF197 - 3p21.31 [CytoView]
Mapping of homologs : NCBIZNF197 [Mapview]
Gene and transcription
Genbank (Entrez)AF011573 AK314196 AL117657 AY074878 AY261677
RefSeq transcript (Entrez)NM_001024855 NM_006991
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004929309
Consensus coding sequences : CCDS (NCBI)ZNF197
Cluster EST : UnigeneHs.157035 [ NCBI ]
CGAP (NCI)Hs.157035
Alternative Splicing : Fast-db (Paris)GSHG0020750
Alternative Splicing GalleryENSG00000186448
Gene ExpressionZNF197 [ NCBI-GEO ]     ZNF197 [ SEEK ]   ZNF197 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14709 (Uniprot)
NextProtO14709  [Medical]
With graphics : InterProO14709
Splice isoforms : SwissVarO14709 (Swissvar)
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrO14709
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations10168
Blocks (Seattle)O14709
Human Protein AtlasENSG00000186448
Peptide AtlasO14709
HPRD10322
IPIIPI00023617   IPI01013120   IPI00383260   IPI00925861   IPI00744049   IPI00926304   
Protein Interaction databases
DIP (DOE-UCLA)O14709
IntAct (EBI)O14709
FunCoupENSG00000186448
BioGRIDZNF197
InParanoidO14709
Interologous Interaction database O14709
IntegromeDBZNF197
STRING (EMBL)ZNF197
Ontologies - Pathways
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Protein Interaction DatabaseZNF197
Wikipedia pathwaysZNF197
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZNF197
SNP (GeneSNP Utah)ZNF197
SNP : HGBaseZNF197
Genetic variants : HAPMAPZNF197
1000_GenomesZNF197 
ICGC programENSG00000186448 
CONAN: Copy Number AnalysisZNF197 
Somatic Mutations in Cancer : COSMICZNF197 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDZNF197
OMIM
MedgenZNF197
GENETestsZNF197
Disease Genetic AssociationZNF197
Huge Navigator ZNF197 [HugePedia]  ZNF197 [HugeCancerGEM]
Genomic VariantsZNF197  ZNF197 [DGVbeta]
Exome VariantZNF197
dbVarZNF197
ClinVarZNF197
snp3D : Map Gene to Disease10168
General knowledge
Homologs : HomoloGeneZNF197
Homology/Alignments : Family Browser (UCSC)ZNF197
Phylogenetic Trees/Animal Genes : TreeFamZNF197
Chemical/Protein Interactions : CTD10168
Chemical/Pharm GKB GenePA37568
Clinical trialZNF197
Cancer Resource (Charite)ENSG00000186448
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
CoreMineZNF197
iHOPZNF197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:27:18 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.