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ZNF2 (zinc finger protein 2)

Identity

Alias_nameszinc finger protein 2 (A1-5)
Alias_symbol (synonym)A1-5
ZNF661
Zfp661
Other alias
HGNC (Hugo) ZNF2
LocusID (NCBI) 7549
Atlas_Id 76020
Location 2q11.1  [Link to chromosome band 2q11]
Location_base_pair Starts at 95165417 and ends at 95184316 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF2   12991
Cards
Entrez_Gene (NCBI)ZNF2  7549  zinc finger protein 2
AliasesA1-5; ZNF661; Zfp661
GeneCards (Weizmann)ZNF2
Ensembl hg19 (Hinxton)ENSG00000275111 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275111 [Gene_View]  chr2:95165417-95184316 [Contig_View]  ZNF2 [Vega]
ICGC DataPortalENSG00000275111
TCGA cBioPortalZNF2
AceView (NCBI)ZNF2
Genatlas (Paris)ZNF2
WikiGenes7549
SOURCE (Princeton)ZNF2
Genetics Home Reference (NIH)ZNF2
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF2  -     chr2:95165417-95184316 +  2q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF2  -     2q11.1   [Description]    (hg19-Feb_2009)
EnsemblZNF2 - 2q11.1 [CytoView hg19]  ZNF2 - 2q11.1 [CytoView hg38]
Mapping of homologs : NCBIZNF2 [Mapview hg19]  ZNF2 [Mapview hg38]
OMIM194500   
Gene and transcription
Genbank (Entrez)AI631860 AK055072 AK290798 AK295739 AK299058
RefSeq transcript (Entrez)NM_001017396 NM_001282398 NM_001291604 NM_001291605 NM_021088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF2
Cluster EST : UnigeneHs.590916 [ NCBI ]
CGAP (NCI)Hs.590916
Alternative Splicing GalleryENSG00000275111
Gene ExpressionZNF2 [ NCBI-GEO ]   ZNF2 [ EBI - ARRAY_EXPRESS ]   ZNF2 [ SEEK ]   ZNF2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7549
GTEX Portal (Tissue expression)ZNF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BSG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BSG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BSG1
Splice isoforms : SwissVarQ9BSG1
PhosPhoSitePlusQ9BSG1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF2
DMDM Disease mutations7549
Blocks (Seattle)ZNF2
SuperfamilyQ9BSG1
Human Protein AtlasENSG00000275111
Peptide AtlasQ9BSG1
HPRD11834
IPIIPI00305348   IPI00745970   IPI00924482   IPI01010950   IPI00556221   IPI00925492   
Protein Interaction databases
DIP (DOE-UCLA)Q9BSG1
IntAct (EBI)Q9BSG1
FunCoupENSG00000275111
BioGRIDZNF2
STRING (EMBL)ZNF2
ZODIACZNF2
Ontologies - Pathways
QuickGOQ9BSG1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF2
Atlas of Cancer Signalling NetworkZNF2
Wikipedia pathwaysZNF2
Orthology - Evolution
OrthoDB7549
GeneTree (enSembl)ENSG00000275111
Phylogenetic Trees/Animal Genes : TreeFamZNF2
HOVERGENQ9BSG1
HOGENOMQ9BSG1
Homologs : HomoloGeneZNF2
Homology/Alignments : Family Browser (UCSC)ZNF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF2
dbVarZNF2
ClinVarZNF2
1000_GenomesZNF2 
Exome Variant ServerZNF2
ExAC (Exome Aggregation Consortium)ZNF2 (select the gene name)
Genetic variants : HAPMAP7549
Genomic Variants (DGV)ZNF2 [DGVbeta]
DECIPHERZNF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF2 
Mutations
ICGC Data PortalZNF2 
TCGA Data PortalZNF2 
Broad Tumor PortalZNF2
OASIS PortalZNF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF2
DgiDB (Drug Gene Interaction Database)ZNF2
DoCM (Curated mutations)ZNF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF2 (select a term)
intoGenZNF2
Cancer3DZNF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194500   
Orphanet
MedgenZNF2
Genetic Testing Registry ZNF2
NextProtQ9BSG1 [Medical]
TSGene7549
GENETestsZNF2
Huge Navigator ZNF2 [HugePedia]
snp3D : Map Gene to Disease7549
BioCentury BCIQZNF2
ClinGenZNF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7549
Chemical/Pharm GKB GenePA37571
Clinical trialZNF2
Miscellaneous
canSAR (ICR)ZNF2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF2
EVEXZNF2
GoPubMedZNF2
iHOPZNF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:32 CEST 2017

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