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ZNF20 (zinc finger protein 20)

Identity

Alias_nameszinc finger protein 20 (KOX 13)
Alias_symbol (synonym)KOX13
Other alias
HGNC (Hugo) ZNF20
LocusID (NCBI) 7568
Atlas_Id 76021
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12131353 and ends at 12140407 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF20 (19p13.2) / DAND5 (19p13.2)ZNF20 (19p13.2) / ZNF20 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF20   12992
Cards
Entrez_Gene (NCBI)ZNF20  7568  zinc finger protein 20
AliasesKOX13
GeneCards (Weizmann)ZNF20
Ensembl hg19 (Hinxton)ENSG00000132010 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132010 [Gene_View]  chr19:12131353-12140407 [Contig_View]  ZNF20 [Vega]
ICGC DataPortalENSG00000132010
TCGA cBioPortalZNF20
AceView (NCBI)ZNF20
Genatlas (Paris)ZNF20
WikiGenes7568
SOURCE (Princeton)ZNF20
Genetics Home Reference (NIH)ZNF20
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF20  -     chr19:12131353-12140407 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF20  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF20 - 19p13.2 [CytoView hg19]  ZNF20 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF20 [Mapview hg19]  ZNF20 [Mapview hg38]
OMIM194557   
Gene and transcription
Genbank (Entrez)AK023094 AL080125 AU152520 BC036714 BC045814
RefSeq transcript (Entrez)NM_001203250 NM_021143
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF20
Cluster EST : UnigeneHs.512823 [ NCBI ]
CGAP (NCI)Hs.512823
Alternative Splicing GalleryENSG00000132010
Gene ExpressionZNF20 [ NCBI-GEO ]   ZNF20 [ EBI - ARRAY_EXPRESS ]   ZNF20 [ SEEK ]   ZNF20 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7568
GTEX Portal (Tissue expression)ZNF20
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17024   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17024  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17024
Splice isoforms : SwissVarP17024
PhosPhoSitePlusP17024
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF20
DMDM Disease mutations7568
Blocks (Seattle)ZNF20
SuperfamilyP17024
Human Protein AtlasENSG00000132010
Peptide AtlasP17024
IPIIPI00550953   IPI00478297   IPI00642492   IPI00927199   
Protein Interaction databases
DIP (DOE-UCLA)P17024
IntAct (EBI)P17024
FunCoupENSG00000132010
BioGRIDZNF20
STRING (EMBL)ZNF20
ZODIACZNF20
Ontologies - Pathways
QuickGOP17024
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF20
Atlas of Cancer Signalling NetworkZNF20
Wikipedia pathwaysZNF20
Orthology - Evolution
OrthoDB7568
GeneTree (enSembl)ENSG00000132010
Phylogenetic Trees/Animal Genes : TreeFamZNF20
HOVERGENP17024
HOGENOMP17024
Homologs : HomoloGeneZNF20
Homology/Alignments : Family Browser (UCSC)ZNF20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF20
dbVarZNF20
ClinVarZNF20
1000_GenomesZNF20 
Exome Variant ServerZNF20
ExAC (Exome Aggregation Consortium)ZNF20 (select the gene name)
Genetic variants : HAPMAP7568
Genomic Variants (DGV)ZNF20 [DGVbeta]
DECIPHERZNF20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF20 
Mutations
ICGC Data PortalZNF20 
TCGA Data PortalZNF20 
Broad Tumor PortalZNF20
OASIS PortalZNF20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF20
DgiDB (Drug Gene Interaction Database)ZNF20
DoCM (Curated mutations)ZNF20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF20 (select a term)
intoGenZNF20
Cancer3DZNF20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194557   
Orphanet
MedgenZNF20
Genetic Testing Registry ZNF20
NextProtP17024 [Medical]
TSGene7568
GENETestsZNF20
Huge Navigator ZNF20 [HugePedia]
snp3D : Map Gene to Disease7568
BioCentury BCIQZNF20
ClinGenZNF20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7568
Chemical/Pharm GKB GenePA37572
Clinical trialZNF20
Miscellaneous
canSAR (ICR)ZNF20 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF20
EVEXZNF20
GoPubMedZNF20
iHOPZNF20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:32 CEST 2017

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