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ZNF200 (zinc finger protein 200)

Identity

Other alias-
HGNC (Hugo) ZNF200
LocusID (NCBI) 7752
Atlas_Id 76022
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3222325 and ends at 3235457 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MKL2 (16p13.12) / ZNF200 (16p13.3)ZNF200 (16p13.3) / COLEC12 (18p11.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF200   12993
Cards
Entrez_Gene (NCBI)ZNF20&nbcp 7752  zinc finger protein 200
Aliases
GeneCards (Weizmann)ZNF200
Ensembl hg19 (Hinxton)ENSG00000010539 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010539 [Gene_View]  chr16:3222325-3235457 [Contig_View]  ZNF200 [Vega]
ICGC DataPortalENSG00000010539
TCGA cBioPortalZNF200
AceView (NCBI)ZNF200
Genatlas (Paris)ZNF200
WikiGenes7752
SOURCE (Princeton)ZNF200
Genetics Home Reference (NIH)ZNF200
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF200  -     chr16:3222325-3235457 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF200  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF200 - 16p13.3 [CytoView hg19]  ZNF200 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF200 [Mapview hg19]  ZNF200 [Mapview hg38]
OMIM603231   
Gene and transcription
Genbank (Entrez)AA338573 AB209219 AF060866 AK056010 AK315036
RefSeq transcript (Entrez)NM_001145446 NM_001145447 NM_001145448 NM_003454 NM_198087 NM_198088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF200
Cluster EST : UnigeneHs.632222 [ NCBI ]
CGAP (NCI)Hs.632222
Alternative Splicing GalleryENSG00000010539
Gene ExpressionZNF200 [ NCBI-GEO ]   ZNF200 [ EBI - ARRAY_EXPRESS ]   ZNF200 [ SEEK ]   ZNF200 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF200 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7752
GTEX Portal (Tissue expression)ZNF200
Protein : pattern, domain, 3D structure
UniProt/SwissProtP98182   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP98182  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP98182
Splice isoforms : SwissVarP98182
PhosPhoSitePlusP98182
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF200
DMDM Disease mutations7752
Blocks (Seattle)ZNF200
SuperfamilyP98182
Human Protein AtlasENSG00000010539
Peptide AtlasP98182
HPRD04452
IPIIPI00377202   IPI00377201   IPI00555967   IPI00646602   
Protein Interaction databases
DIP (DOE-UCLA)P98182
IntAct (EBI)P98182
FunCoupENSG00000010539
BioGRIDZNF200
STRING (EMBL)ZNF200
ZODIACZNF200
Ontologies - Pathways
QuickGOP98182
Ontology : AmiGOmolecular_function  nucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  nucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF200
Atlas of Cancer Signalling NetworkZNF200
Wikipedia pathwaysZNF200
Orthology - Evolution
OrthoDB7752
GeneTree (enSembl)ENSG00000010539
Phylogenetic Trees/Animal Genes : TreeFamZNF200
HOVERGENP98182
HOGENOMP98182
Homologs : HomoloGeneZNF200
Homology/Alignments : Family Browser (UCSC)ZNF200
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF200 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF200
dbVarZNF200
ClinVarZNF200
1000_GenomesZNF200 
Exome Variant ServerZNF200
ExAC (Exome Aggregation Consortium)ZNF200 (select the gene name)
Genetic variants : HAPMAP7752
Genomic Variants (DGV)ZNF200 [DGVbeta]
DECIPHERZNF200 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF200 
Mutations
ICGC Data PortalZNF200 
TCGA Data PortalZNF200 
Broad Tumor PortalZNF200
OASIS PortalZNF200 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF200  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF200
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF200
DgiDB (Drug Gene Interaction Database)ZNF200
DoCM (Curated mutations)ZNF200 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF200 (select a term)
intoGenZNF200
Cancer3DZNF200(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603231   
Orphanet
MedgenZNF200
Genetic Testing Registry ZNF200
NextProtP98182 [Medical]
TSGene7752
GENETestsZNF200
Target ValidationZNF200
Huge Navigator ZNF200 [HugePedia]
snp3D : Map Gene to Disease7752
BioCentury BCIQZNF200
ClinGenZNF200
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7752
Chemical/Pharm GKB GenePA37573
Clinical trialZNF200
Miscellaneous
canSAR (ICR)ZNF200 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF200
EVEXZNF200
GoPubMedZNF200
iHOPZNF200
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:28 CEST 2017

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