Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF202 (zinc finger protein 202)

Identity

Alias_symbol (synonym)ZKSCAN10
ZSCAN42
Other alias
HGNC (Hugo) ZNF202
LocusID (NCBI) 7753
Atlas_Id 50563
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 123723927 and ends at 123741683 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FXYD3 (19q13.12) / ZNF202 (11q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF202   12994
Cards
Entrez_Gene (NCBI)ZNF202  7753  zinc finger protein 202
AliasesZKSCAN10; ZSCAN42
GeneCards (Weizmann)ZNF202
Ensembl hg19 (Hinxton)ENSG00000166261 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166261 [Gene_View]  chr11:123723927-123741683 [Contig_View]  ZNF202 [Vega]
ICGC DataPortalENSG00000166261
TCGA cBioPortalZNF202
AceView (NCBI)ZNF202
Genatlas (Paris)ZNF202
WikiGenes7753
SOURCE (Princeton)ZNF202
Genetics Home Reference (NIH)ZNF202
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF202  -     chr11:123723927-123741683 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF202  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblZNF202 - 11q24.1 [CytoView hg19]  ZNF202 - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIZNF202 [Mapview hg19]  ZNF202 [Mapview hg38]
OMIM603430   
Gene and transcription
Genbank (Entrez)AF027218 AF027219 AF155101 AK023751 AK226047
RefSeq transcript (Entrez)NM_001301779 NM_001301780 NM_001301819 NM_003455
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF202
Cluster EST : UnigeneHs.112556 [ NCBI ]
CGAP (NCI)Hs.112556
Alternative Splicing GalleryENSG00000166261
Gene ExpressionZNF202 [ NCBI-GEO ]   ZNF202 [ EBI - ARRAY_EXPRESS ]   ZNF202 [ SEEK ]   ZNF202 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF202 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7753
GTEX Portal (Tissue expression)ZNF202
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95125   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95125  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95125
Splice isoforms : SwissVarO95125
PhosPhoSitePlusO95125
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF202
DMDM Disease mutations7753
Blocks (Seattle)ZNF202
SuperfamilyO95125
Human Protein AtlasENSG00000166261
Peptide AtlasO95125
HPRD04577
IPIIPI00028828   IPI00472538   IPI00981593   IPI00979458   IPI00978914   
Protein Interaction databases
DIP (DOE-UCLA)O95125
IntAct (EBI)O95125
FunCoupENSG00000166261
BioGRIDZNF202
STRING (EMBL)ZNF202
ZODIACZNF202
Ontologies - Pathways
QuickGOO95125
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  mitochondrion  transcription from RNA polymerase II promoter  lipid metabolic process  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleoplasm  mitochondrion  transcription from RNA polymerase II promoter  lipid metabolic process  metal ion binding  
NDEx NetworkZNF202
Atlas of Cancer Signalling NetworkZNF202
Wikipedia pathwaysZNF202
Orthology - Evolution
OrthoDB7753
GeneTree (enSembl)ENSG00000166261
Phylogenetic Trees/Animal Genes : TreeFamZNF202
HOVERGENO95125
HOGENOMO95125
Homologs : HomoloGeneZNF202
Homology/Alignments : Family Browser (UCSC)ZNF202
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF202 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF202
dbVarZNF202
ClinVarZNF202
1000_GenomesZNF202 
Exome Variant ServerZNF202
ExAC (Exome Aggregation Consortium)ZNF202 (select the gene name)
Genetic variants : HAPMAP7753
Genomic Variants (DGV)ZNF202 [DGVbeta]
DECIPHERZNF202 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF202 
Mutations
ICGC Data PortalZNF202 
TCGA Data PortalZNF202 
Broad Tumor PortalZNF202
OASIS PortalZNF202 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF202  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF202
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF202
DgiDB (Drug Gene Interaction Database)ZNF202
DoCM (Curated mutations)ZNF202 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF202 (select a term)
intoGenZNF202
Cancer3DZNF202(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603430   
Orphanet
MedgenZNF202
Genetic Testing Registry ZNF202
NextProtO95125 [Medical]
TSGene7753
GENETestsZNF202
Target ValidationZNF202
Huge Navigator ZNF202 [HugePedia]
snp3D : Map Gene to Disease7753
BioCentury BCIQZNF202
ClinGenZNF202
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7753
Chemical/Pharm GKB GenePA37574
Clinical trialZNF202
Miscellaneous
canSAR (ICR)ZNF202 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF202
EVEXZNF202
GoPubMedZNF202
iHOPZNF202
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:39:08 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.