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ZNF208 (zinc finger protein 208)

Identity

Alias_symbol (synonym)PMIDP
ZNF95
Other alias
HGNC (Hugo) ZNF208
LocusID (NCBI) 7757
Atlas_Id 76026
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 21939766 and ends at 22010943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
YAE1D1 (7p14.1) / ZNF208 (19p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF208   12999
Cards
Entrez_Gene (NCBI)ZNF208  7757  zinc finger protein 208
AliasesPMIDP; ZNF95
GeneCards (Weizmann)ZNF208
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:21939766-22010943 [Contig_View]  ZNF208 [Vega]
TCGA cBioPortalZNF208
AceView (NCBI)ZNF208
Genatlas (Paris)ZNF208
WikiGenes7757
SOURCE (Princeton)ZNF208
Genetics Home Reference (NIH)ZNF208
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF208  -     chr19:21939766-22010943 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF208  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF208 - 19p12 [CytoView hg19]  ZNF208 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF208 [Mapview hg19]  ZNF208 [Mapview hg38]
OMIM603977   
Gene and transcription
Genbank (Entrez)AK096236 BC038199 BX281273 CB997649
RefSeq transcript (Entrez)NM_001329971 NM_001329972 NM_001329973 NM_001329974 NM_007153
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF208
Cluster EST : UnigeneHs.732975 [ NCBI ]
CGAP (NCI)Hs.732975
Gene ExpressionZNF208 [ NCBI-GEO ]   ZNF208 [ EBI - ARRAY_EXPRESS ]   ZNF208 [ SEEK ]   ZNF208 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF208 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7757
GTEX Portal (Tissue expression)ZNF208
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43345   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43345  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43345
Splice isoforms : SwissVarO43345
PhosPhoSitePlusO43345
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF208
DMDM Disease mutations7757
Blocks (Seattle)ZNF208
SuperfamilyO43345
Peptide AtlasO43345
HPRD05998
IPIIPI00941719   IPI01011766   IPI00479144   
Protein Interaction databases
DIP (DOE-UCLA)O43345
IntAct (EBI)O43345
BioGRIDZNF208
STRING (EMBL)ZNF208
ZODIACZNF208
Ontologies - Pathways
QuickGOO43345
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF208
Atlas of Cancer Signalling NetworkZNF208
Wikipedia pathwaysZNF208
Orthology - Evolution
OrthoDB7757
Phylogenetic Trees/Animal Genes : TreeFamZNF208
HOVERGENO43345
HOGENOMO43345
Homologs : HomoloGeneZNF208
Homology/Alignments : Family Browser (UCSC)ZNF208
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF208 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF208
dbVarZNF208
ClinVarZNF208
1000_GenomesZNF208 
Exome Variant ServerZNF208
ExAC (Exome Aggregation Consortium)ZNF208 (select the gene name)
Genetic variants : HAPMAP7757
Genomic Variants (DGV)ZNF208 [DGVbeta]
DECIPHERZNF208 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF208 
Mutations
ICGC Data PortalZNF208 
TCGA Data PortalZNF208 
Broad Tumor PortalZNF208
OASIS PortalZNF208 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF208  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF208
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF208
DgiDB (Drug Gene Interaction Database)ZNF208
DoCM (Curated mutations)ZNF208 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF208 (select a term)
intoGenZNF208
Cancer3DZNF208(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603977   
Orphanet
MedgenZNF208
Genetic Testing Registry ZNF208
NextProtO43345 [Medical]
TSGene7757
GENETestsZNF208
Target ValidationZNF208
Huge Navigator ZNF208 [HugePedia]
snp3D : Map Gene to Disease7757
BioCentury BCIQZNF208
ClinGenZNF208
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7757
Chemical/Pharm GKB GenePA37579
Clinical trialZNF208
Miscellaneous
canSAR (ICR)ZNF208 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF208
EVEXZNF208
GoPubMedZNF208
iHOPZNF208
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:28 CEST 2017

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