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ZNF213 (zinc finger protein 213)

Identity

Alias_symbol (synonym)CR53
ZKSCAN21
ZSCAN53
Other alias
HGNC (Hugo) ZNF213
LocusID (NCBI) 7760
Atlas_Id 76029
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3135133 and ends at 3142804 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF213   13005
Cards
Entrez_Gene (NCBI)ZNF213  7760  zinc finger protein 213
AliasesCR53; ZKSCAN21; ZSCAN53
GeneCards (Weizmann)ZNF213
Ensembl hg19 (Hinxton)ENSG00000085644 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000085644 [Gene_View]  chr16:3135133-3142804 [Contig_View]  ZNF213 [Vega]
ICGC DataPortalENSG00000085644
TCGA cBioPortalZNF213
AceView (NCBI)ZNF213
Genatlas (Paris)ZNF213
WikiGenes7760
SOURCE (Princeton)ZNF213
Genetics Home Reference (NIH)ZNF213
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF213  -     chr16:3135133-3142804 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF213  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNF213 - 16p13.3 [CytoView hg19]  ZNF213 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNF213 [Mapview hg19]  ZNF213 [Mapview hg38]
OMIM608387   
Gene and transcription
Genbank (Entrez)AF017433 AK055337 AK289834 AK291789 AK297454
RefSeq transcript (Entrez)NM_001134655 NM_004220
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF213
Cluster EST : UnigeneHs.115284 [ NCBI ]
CGAP (NCI)Hs.115284
Alternative Splicing GalleryENSG00000085644
Gene ExpressionZNF213 [ NCBI-GEO ]   ZNF213 [ EBI - ARRAY_EXPRESS ]   ZNF213 [ SEEK ]   ZNF213 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF213 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7760
GTEX Portal (Tissue expression)ZNF213
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14771   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14771  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14771
Splice isoforms : SwissVarO14771
PhosPhoSitePlusO14771
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF213
DMDM Disease mutations7760
Blocks (Seattle)ZNF213
SuperfamilyO14771
Human Protein AtlasENSG00000085644
Peptide AtlasO14771
HPRD12224
IPIIPI00910299   IPI00220992   
Protein Interaction databases
DIP (DOE-UCLA)O14771
IntAct (EBI)O14771
FunCoupENSG00000085644
BioGRIDZNF213
STRING (EMBL)ZNF213
ZODIACZNF213
Ontologies - Pathways
QuickGOO14771
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF213
Atlas of Cancer Signalling NetworkZNF213
Wikipedia pathwaysZNF213
Orthology - Evolution
OrthoDB7760
GeneTree (enSembl)ENSG00000085644
Phylogenetic Trees/Animal Genes : TreeFamZNF213
HOVERGENO14771
HOGENOMO14771
Homologs : HomoloGeneZNF213
Homology/Alignments : Family Browser (UCSC)ZNF213
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF213 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF213
dbVarZNF213
ClinVarZNF213
1000_GenomesZNF213 
Exome Variant ServerZNF213
ExAC (Exome Aggregation Consortium)ZNF213 (select the gene name)
Genetic variants : HAPMAP7760
Genomic Variants (DGV)ZNF213 [DGVbeta]
DECIPHERZNF213 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF213 
Mutations
ICGC Data PortalZNF213 
TCGA Data PortalZNF213 
Broad Tumor PortalZNF213
OASIS PortalZNF213 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF213  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF213
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF213
DgiDB (Drug Gene Interaction Database)ZNF213
DoCM (Curated mutations)ZNF213 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF213 (select a term)
intoGenZNF213
Cancer3DZNF213(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608387   
Orphanet
MedgenZNF213
Genetic Testing Registry ZNF213
NextProtO14771 [Medical]
TSGene7760
GENETestsZNF213
Target ValidationZNF213
Huge Navigator ZNF213 [HugePedia]
snp3D : Map Gene to Disease7760
BioCentury BCIQZNF213
ClinGenZNF213
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7760
Chemical/Pharm GKB GenePA37584
Clinical trialZNF213
Miscellaneous
canSAR (ICR)ZNF213 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF213
EVEXZNF213
GoPubMedZNF213
iHOPZNF213
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:29 CEST 2017

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