Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF22 (zinc finger protein 22)

Identity

Alias (NCBI)HKR-T1
KOX15
ZNF422
Zfp422
HGNC (Hugo) ZNF22
HGNC Alias symbKOX15
HKR-T1
ZNF422
Zfp422
LocusID (NCBI) 7570
Atlas_Id 76033
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 45000825 and ends at 45005329 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RASSF4 (10q11.21) / ZNF22 (10q11.21)ZNF22 (10q11.21) / ZNF22 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF22   13012
Cards
Entrez_Gene (NCBI)ZNF22    zinc finger protein 22
AliasesHKR-T1; KOX15; ZNF422; Zfp422
GeneCards (Weizmann)ZNF22
Ensembl hg19 (Hinxton)ENSG00000165512 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165512 [Gene_View]  ENSG00000165512 [Sequence]  chr10:45000825-45005329 [Contig_View]  ZNF22 [Vega]
ICGC DataPortalENSG00000165512
TCGA cBioPortalZNF22
AceView (NCBI)ZNF22
Genatlas (Paris)ZNF22
SOURCE (Princeton)ZNF22
Genetics Home Reference (NIH)ZNF22
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF22  -     chr10:45000825-45005329 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF22  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathZNF22 - 10q11.21 [CytoView hg19]  ZNF22 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000165512
genome Data Viewer NCBIZNF22 [Mapview hg19]  
OMIM194529   
Gene and transcription
Genbank (Entrez)AK291508 AK312278 AU310379 BC010642 BC026193
RefSeq transcript (Entrez)NM_006963
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF22
Alternative Splicing GalleryENSG00000165512
Gene ExpressionZNF22 [ NCBI-GEO ]   ZNF22 [ EBI - ARRAY_EXPRESS ]   ZNF22 [ SEEK ]   ZNF22 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF22 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF22 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7570
GTEX Portal (Tissue expression)ZNF22
Human Protein AtlasENSG00000165512-ZNF22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17026   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17026  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17026
Splice isoforms : SwissVarP17026
PhosPhoSitePlusP17026
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF22
Blocks (Seattle)ZNF22
SuperfamilyP17026
Human Protein Atlas [tissue]ENSG00000165512-ZNF22 [tissue]
Peptide AtlasP17026
HPRD01917
IPIIPI00215890   IPI00746845   
Protein Interaction databases
DIP (DOE-UCLA)P17026
IntAct (EBI)P17026
BioGRIDZNF22
STRING (EMBL)ZNF22
ZODIACZNF22
Ontologies - Pathways
QuickGOP17026
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  nucleus  nucleoplasm  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  zinc ion binding  odontogenesis  sequence-specific DNA binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  nucleus  nucleoplasm  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  zinc ion binding  odontogenesis  sequence-specific DNA binding  
NDEx NetworkZNF22
Atlas of Cancer Signalling NetworkZNF22
Wikipedia pathwaysZNF22
Orthology - Evolution
OrthoDB7570
GeneTree (enSembl)ENSG00000165512
Phylogenetic Trees/Animal Genes : TreeFamZNF22
HOGENOMP17026
Homologs : HomoloGeneZNF22
Homology/Alignments : Family Browser (UCSC)ZNF22
Gene fusions - Rearrangements
Fusion : QuiverZNF22
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF22 [hg38]
dbVarZNF22
ClinVarZNF22
MonarchZNF22
1000_GenomesZNF22 
Exome Variant ServerZNF22
GNOMAD BrowserENSG00000165512
Varsome BrowserZNF22
Genomic Variants (DGV)ZNF22 [DGVbeta]
DECIPHERZNF22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF22 
Mutations
ICGC Data PortalZNF22 
TCGA Data PortalZNF22 
Broad Tumor PortalZNF22
OASIS PortalZNF22 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF22  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF22
Mutations and Diseases : HGMDZNF22
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF22
DgiDB (Drug Gene Interaction Database)ZNF22
DoCM (Curated mutations)ZNF22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF22 (select a term)
intoGenZNF22
Cancer3DZNF22(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194529   
Orphanet
DisGeNETZNF22
MedgenZNF22
Genetic Testing Registry ZNF22
NextProtP17026 [Medical]
GENETestsZNF22
Target ValidationZNF22
Huge Navigator ZNF22 [HugePedia]
ClinGenZNF22
Clinical trials, drugs, therapy
MyCancerGenomeZNF22
Protein Interactions : CTD
Pharm GKB GenePA37591
Clinical trialZNF22
Miscellaneous
canSAR (ICR)ZNF22 (select the gene name)
HarmonizomeZNF22
DataMed IndexZNF22
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF22
EVEXZNF22
GoPubMedZNF22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:35:42 CET 2020
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