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ZNF221 (zinc finger protein 221)

Identity

Other alias-
HGNC (Hugo) ZNF221
LocusID (NCBI) 7638
Atlas_Id 76034
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43951223 and ends at 43967600 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF221   13014
Cards
Entrez_Gene (NCBI)ZNF221  7638  zinc finger protein 221
Aliases
GeneCards (Weizmann)ZNF221
Ensembl hg19 (Hinxton)ENSG00000159905 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159905 [Gene_View]  chr19:43951223-43967600 [Contig_View]  ZNF221 [Vega]
ICGC DataPortalENSG00000159905
TCGA cBioPortalZNF221
AceView (NCBI)ZNF221
Genatlas (Paris)ZNF221
WikiGenes7638
SOURCE (Princeton)ZNF221
Genetics Home Reference (NIH)ZNF221
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF221  -     chr19:43951223-43967600 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF221  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF221 - 19q13.31 [CytoView hg19]  ZNF221 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF221 [Mapview hg19]  ZNF221 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF187987 AK314207 BC111981 BC113426 BC143659
RefSeq transcript (Entrez)NM_001297588 NM_001297589 NM_013359
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF221
Cluster EST : UnigeneHs.631598 [ NCBI ]
CGAP (NCI)Hs.631598
Alternative Splicing GalleryENSG00000159905
Gene ExpressionZNF221 [ NCBI-GEO ]   ZNF221 [ EBI - ARRAY_EXPRESS ]   ZNF221 [ SEEK ]   ZNF221 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF221 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7638
GTEX Portal (Tissue expression)ZNF221
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK13
Splice isoforms : SwissVarQ9UK13
PhosPhoSitePlusQ9UK13
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF221
DMDM Disease mutations7638
Blocks (Seattle)ZNF221
SuperfamilyQ9UK13
Human Protein AtlasENSG00000159905
Peptide AtlasQ9UK13
HPRD10323
IPIIPI00639854   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK13
IntAct (EBI)Q9UK13
FunCoupENSG00000159905
BioGRIDZNF221
STRING (EMBL)ZNF221
ZODIACZNF221
Ontologies - Pathways
QuickGOQ9UK13
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF221
Atlas of Cancer Signalling NetworkZNF221
Wikipedia pathwaysZNF221
Orthology - Evolution
OrthoDB7638
GeneTree (enSembl)ENSG00000159905
Phylogenetic Trees/Animal Genes : TreeFamZNF221
HOVERGENQ9UK13
HOGENOMQ9UK13
Homologs : HomoloGeneZNF221
Homology/Alignments : Family Browser (UCSC)ZNF221
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF221 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF221
dbVarZNF221
ClinVarZNF221
1000_GenomesZNF221 
Exome Variant ServerZNF221
ExAC (Exome Aggregation Consortium)ZNF221 (select the gene name)
Genetic variants : HAPMAP7638
Genomic Variants (DGV)ZNF221 [DGVbeta]
DECIPHERZNF221 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF221 
Mutations
ICGC Data PortalZNF221 
TCGA Data PortalZNF221 
Broad Tumor PortalZNF221
OASIS PortalZNF221 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF221  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF221
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF221
DgiDB (Drug Gene Interaction Database)ZNF221
DoCM (Curated mutations)ZNF221 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF221 (select a term)
intoGenZNF221
Cancer3DZNF221(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF221
Genetic Testing Registry ZNF221
NextProtQ9UK13 [Medical]
TSGene7638
GENETestsZNF221
Target ValidationZNF221
Huge Navigator ZNF221 [HugePedia]
snp3D : Map Gene to Disease7638
BioCentury BCIQZNF221
ClinGenZNF221
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7638
Chemical/Pharm GKB GenePA37593
Clinical trialZNF221
Miscellaneous
canSAR (ICR)ZNF221 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF221
EVEXZNF221
GoPubMedZNF221
iHOPZNF221
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:02 CEST 2017

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