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ZNF222 (zinc finger protein 222)

Identity

Other alias-
HGNC (Hugo) ZNF222
LocusID (NCBI) 7673
Atlas_Id 76035
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44025342 and ends at 44033109 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF222   13015
Cards
Entrez_Gene (NCBI)ZNF222  7673  zinc finger protein 222
Aliases
GeneCards (Weizmann)ZNF222
Ensembl hg19 (Hinxton)ENSG00000159885 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159885 [Gene_View]  chr19:44025342-44033109 [Contig_View]  ZNF222 [Vega]
ICGC DataPortalENSG00000159885
TCGA cBioPortalZNF222
AceView (NCBI)ZNF222
Genatlas (Paris)ZNF222
WikiGenes7673
SOURCE (Princeton)ZNF222
Genetics Home Reference (NIH)ZNF222
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF222  -     chr19:44025342-44033109 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF222  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF222 - 19q13.31 [CytoView hg19]  ZNF222 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF222 [Mapview hg19]  ZNF222 [Mapview hg38]
OMIM617357   
Gene and transcription
Genbank (Entrez)AF187988 AK095196 BC030261 DB185422
RefSeq transcript (Entrez)NM_001129996 NM_013360
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF222
Cluster EST : UnigeneHs.279840 [ NCBI ]
CGAP (NCI)Hs.279840
Alternative Splicing GalleryENSG00000159885
Gene ExpressionZNF222 [ NCBI-GEO ]   ZNF222 [ EBI - ARRAY_EXPRESS ]   ZNF222 [ SEEK ]   ZNF222 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF222 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7673
GTEX Portal (Tissue expression)ZNF222
Human Protein AtlasENSG00000159885-ZNF222 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK12
Splice isoforms : SwissVarQ9UK12
PhosPhoSitePlusQ9UK12
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF222
DMDM Disease mutations7673
Blocks (Seattle)ZNF222
SuperfamilyQ9UK12
Human Protein Atlas [tissue]ENSG00000159885-ZNF222 [tissue]
Peptide AtlasQ9UK12
HPRD15748
IPIIPI00007040   IPI00916925   IPI00641774   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK12
IntAct (EBI)Q9UK12
FunCoupENSG00000159885
BioGRIDZNF222
STRING (EMBL)ZNF222
ZODIACZNF222
Ontologies - Pathways
QuickGOQ9UK12
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF222
Atlas of Cancer Signalling NetworkZNF222
Wikipedia pathwaysZNF222
Orthology - Evolution
OrthoDB7673
GeneTree (enSembl)ENSG00000159885
Phylogenetic Trees/Animal Genes : TreeFamZNF222
HOVERGENQ9UK12
HOGENOMQ9UK12
Homologs : HomoloGeneZNF222
Homology/Alignments : Family Browser (UCSC)ZNF222
Gene fusions - Rearrangements
Tumor Fusion PortalZNF222
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF222 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF222
dbVarZNF222
ClinVarZNF222
1000_GenomesZNF222 
Exome Variant ServerZNF222
ExAC (Exome Aggregation Consortium)ENSG00000159885
GNOMAD BrowserENSG00000159885
Genetic variants : HAPMAP7673
Genomic Variants (DGV)ZNF222 [DGVbeta]
DECIPHERZNF222 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF222 
Mutations
ICGC Data PortalZNF222 
TCGA Data PortalZNF222 
Broad Tumor PortalZNF222
OASIS PortalZNF222 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF222  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF222
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF222
DgiDB (Drug Gene Interaction Database)ZNF222
DoCM (Curated mutations)ZNF222 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF222 (select a term)
intoGenZNF222
Cancer3DZNF222(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617357   
Orphanet
DisGeNETZNF222
MedgenZNF222
Genetic Testing Registry ZNF222
NextProtQ9UK12 [Medical]
TSGene7673
GENETestsZNF222
Target ValidationZNF222
Huge Navigator ZNF222 [HugePedia]
snp3D : Map Gene to Disease7673
BioCentury BCIQZNF222
ClinGenZNF222
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7673
Chemical/Pharm GKB GenePA37594
Clinical trialZNF222
Miscellaneous
canSAR (ICR)ZNF222 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF222
EVEXZNF222
GoPubMedZNF222
iHOPZNF222
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:26 CET 2017

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