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ZNF223 (zinc finger protein 223)

Identity

Other alias-
HGNC (Hugo) ZNF223
LocusID (NCBI) 7766
Atlas_Id 76036
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44052011 and ends at 44067994 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF223 (19q13.31) / RNPS1 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF223   13016
Cards
Entrez_Gene (NCBI)ZNF223  7766  zinc finger protein 223
Aliases
GeneCards (Weizmann)ZNF223
Ensembl hg19 (Hinxton)ENSG00000178386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178386 [Gene_View]  chr19:44052011-44067994 [Contig_View]  ZNF223 [Vega]
ICGC DataPortalENSG00000178386
TCGA cBioPortalZNF223
AceView (NCBI)ZNF223
Genatlas (Paris)ZNF223
WikiGenes7766
SOURCE (Princeton)ZNF223
Genetics Home Reference (NIH)ZNF223
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF223  -     chr19:44052011-44067994 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF223  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF223 - 19q13.31 [CytoView hg19]  ZNF223 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF223 [Mapview hg19]  ZNF223 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF187989 AK292327 BC022466 DR761157 EU446732
RefSeq transcript (Entrez)NM_013361
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF223
Cluster EST : UnigeneHs.720813 [ NCBI ]
CGAP (NCI)Hs.720813
Alternative Splicing GalleryENSG00000178386
Gene ExpressionZNF223 [ NCBI-GEO ]   ZNF223 [ EBI - ARRAY_EXPRESS ]   ZNF223 [ SEEK ]   ZNF223 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF223 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7766
GTEX Portal (Tissue expression)ZNF223
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK11
Splice isoforms : SwissVarQ9UK11
PhosPhoSitePlusQ9UK11
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF223
DMDM Disease mutations7766
Blocks (Seattle)ZNF223
SuperfamilyQ9UK11
Human Protein AtlasENSG00000178386
Peptide AtlasQ9UK11
HPRD15749
IPIIPI00296696   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK11
IntAct (EBI)Q9UK11
FunCoupENSG00000178386
BioGRIDZNF223
STRING (EMBL)ZNF223
ZODIACZNF223
Ontologies - Pathways
QuickGOQ9UK11
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZNF223
Atlas of Cancer Signalling NetworkZNF223
Wikipedia pathwaysZNF223
Orthology - Evolution
OrthoDB7766
GeneTree (enSembl)ENSG00000178386
Phylogenetic Trees/Animal Genes : TreeFamZNF223
HOVERGENQ9UK11
HOGENOMQ9UK11
Homologs : HomoloGeneZNF223
Homology/Alignments : Family Browser (UCSC)ZNF223
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF223 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF223
dbVarZNF223
ClinVarZNF223
1000_GenomesZNF223 
Exome Variant ServerZNF223
ExAC (Exome Aggregation Consortium)ZNF223 (select the gene name)
Genetic variants : HAPMAP7766
Genomic Variants (DGV)ZNF223 [DGVbeta]
DECIPHERZNF223 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF223 
Mutations
ICGC Data PortalZNF223 
TCGA Data PortalZNF223 
Broad Tumor PortalZNF223
OASIS PortalZNF223 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF223  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF223
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF223
DgiDB (Drug Gene Interaction Database)ZNF223
DoCM (Curated mutations)ZNF223 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF223 (select a term)
intoGenZNF223
Cancer3DZNF223(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF223
Genetic Testing Registry ZNF223
NextProtQ9UK11 [Medical]
TSGene7766
GENETestsZNF223
Target ValidationZNF223
Huge Navigator ZNF223 [HugePedia]
snp3D : Map Gene to Disease7766
BioCentury BCIQZNF223
ClinGenZNF223
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7766
Chemical/Pharm GKB GenePA37595
Clinical trialZNF223
Miscellaneous
canSAR (ICR)ZNF223 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF223
EVEXZNF223
GoPubMedZNF223
iHOPZNF223
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:03 CEST 2017

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