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ZNF225 (zinc finger protein 225)

Identity

Other alias-
HGNC (Hugo) ZNF225
LocusID (NCBI) 7768
Atlas_Id 76037
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44113362 and ends at 44134816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PPP1R37 (19q13.32) / ZNF225 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF225   13018
Cards
Entrez_Gene (NCBI)ZNF225  7768  zinc finger protein 225
Aliases
GeneCards (Weizmann)ZNF225
Ensembl hg19 (Hinxton)ENSG00000256294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256294 [Gene_View]  chr19:44113362-44134816 [Contig_View]  ZNF225 [Vega]
ICGC DataPortalENSG00000256294
TCGA cBioPortalZNF225
AceView (NCBI)ZNF225
Genatlas (Paris)ZNF225
WikiGenes7768
SOURCE (Princeton)ZNF225
Genetics Home Reference (NIH)ZNF225
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF225  -     chr19:44113362-44134816 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF225  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF225 - 19q13.31 [CytoView hg19]  ZNF225 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF225 [Mapview hg19]  ZNF225 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF027138 AF187991 AK223477 AK292437 AK302106
RefSeq transcript (Entrez)NM_001321685 NM_013362
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF225
Cluster EST : UnigeneHs.709835 [ NCBI ]
CGAP (NCI)Hs.709835
Alternative Splicing GalleryENSG00000256294
Gene ExpressionZNF225 [ NCBI-GEO ]   ZNF225 [ EBI - ARRAY_EXPRESS ]   ZNF225 [ SEEK ]   ZNF225 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF225 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7768
GTEX Portal (Tissue expression)ZNF225
Human Protein AtlasENSG00000256294-ZNF225 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK10   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK10  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK10
Splice isoforms : SwissVarQ9UK10
PhosPhoSitePlusQ9UK10
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF225
DMDM Disease mutations7768
Blocks (Seattle)ZNF225
SuperfamilyQ9UK10
Human Protein Atlas [tissue]ENSG00000256294-ZNF225 [tissue]
Peptide AtlasQ9UK10
HPRD15750
IPIIPI00007035   IPI01013534   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK10
IntAct (EBI)Q9UK10
FunCoupENSG00000256294
BioGRIDZNF225
STRING (EMBL)ZNF225
ZODIACZNF225
Ontologies - Pathways
QuickGOQ9UK10
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF225
Atlas of Cancer Signalling NetworkZNF225
Wikipedia pathwaysZNF225
Orthology - Evolution
OrthoDB7768
GeneTree (enSembl)ENSG00000256294
Phylogenetic Trees/Animal Genes : TreeFamZNF225
HOVERGENQ9UK10
HOGENOMQ9UK10
Homologs : HomoloGeneZNF225
Homology/Alignments : Family Browser (UCSC)ZNF225
Gene fusions - Rearrangements
Tumor Fusion PortalZNF225
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF225 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF225
dbVarZNF225
ClinVarZNF225
1000_GenomesZNF225 
Exome Variant ServerZNF225
ExAC (Exome Aggregation Consortium)ENSG00000256294
GNOMAD BrowserENSG00000256294
Genetic variants : HAPMAP7768
Genomic Variants (DGV)ZNF225 [DGVbeta]
DECIPHERZNF225 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF225 
Mutations
ICGC Data PortalZNF225 
TCGA Data PortalZNF225 
Broad Tumor PortalZNF225
OASIS PortalZNF225 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF225  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF225
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF225
DgiDB (Drug Gene Interaction Database)ZNF225
DoCM (Curated mutations)ZNF225 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF225 (select a term)
intoGenZNF225
Cancer3DZNF225(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF225
MedgenZNF225
Genetic Testing Registry ZNF225
NextProtQ9UK10 [Medical]
TSGene7768
GENETestsZNF225
Target ValidationZNF225
Huge Navigator ZNF225 [HugePedia]
snp3D : Map Gene to Disease7768
BioCentury BCIQZNF225
ClinGenZNF225
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7768
Chemical/Pharm GKB GenePA37597
Clinical trialZNF225
Miscellaneous
canSAR (ICR)ZNF225 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF225
EVEXZNF225
GoPubMedZNF225
iHOPZNF225
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:26 CET 2017

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