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ZNF227 (zinc finger protein 227)

Identity

Other alias-
HGNC (Hugo) ZNF227
LocusID (NCBI) 7770
Atlas_Id 76039
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44212528 and ends at 44237268 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF227   13020
Cards
Entrez_Gene (NCBI)ZNF227  7770  zinc finger protein 227
Aliases
GeneCards (Weizmann)ZNF227
Ensembl hg19 (Hinxton)ENSG00000131115 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131115 [Gene_View]  chr19:44212528-44237268 [Contig_View]  ZNF227 [Vega]
ICGC DataPortalENSG00000131115
TCGA cBioPortalZNF227
AceView (NCBI)ZNF227
Genatlas (Paris)ZNF227
WikiGenes7770
SOURCE (Princeton)ZNF227
Genetics Home Reference (NIH)ZNF227
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF227  -     chr19:44212528-44237268 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF227  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF227 - 19q13.31 [CytoView hg19]  ZNF227 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF227 [Mapview hg19]  ZNF227 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092253 AK299266 AK300576 AK311670 AK316048
RefSeq transcript (Entrez)NM_001289166 NM_001289167 NM_001289168 NM_001289169 NM_001289170 NM_001289171 NM_001289172 NM_001289173 NM_182490
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF227
Cluster EST : UnigeneHs.298089 [ NCBI ]
CGAP (NCI)Hs.298089
Alternative Splicing GalleryENSG00000131115
Gene ExpressionZNF227 [ NCBI-GEO ]   ZNF227 [ EBI - ARRAY_EXPRESS ]   ZNF227 [ SEEK ]   ZNF227 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF227 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7770
GTEX Portal (Tissue expression)ZNF227
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WZ6
Splice isoforms : SwissVarQ86WZ6
PhosPhoSitePlusQ86WZ6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF227
DMDM Disease mutations7770
Blocks (Seattle)ZNF227
SuperfamilyQ86WZ6
Human Protein AtlasENSG00000131115
Peptide AtlasQ86WZ6
HPRD15752
IPIIPI00177827   IPI00872175   IPI00432577   IPI01015104   IPI01010268   
Protein Interaction databases
DIP (DOE-UCLA)Q86WZ6
IntAct (EBI)Q86WZ6
FunCoupENSG00000131115
BioGRIDZNF227
STRING (EMBL)ZNF227
ZODIACZNF227
Ontologies - Pathways
QuickGOQ86WZ6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF227
Atlas of Cancer Signalling NetworkZNF227
Wikipedia pathwaysZNF227
Orthology - Evolution
OrthoDB7770
GeneTree (enSembl)ENSG00000131115
Phylogenetic Trees/Animal Genes : TreeFamZNF227
HOVERGENQ86WZ6
HOGENOMQ86WZ6
Homologs : HomoloGeneZNF227
Homology/Alignments : Family Browser (UCSC)ZNF227
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF227 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF227
dbVarZNF227
ClinVarZNF227
1000_GenomesZNF227 
Exome Variant ServerZNF227
ExAC (Exome Aggregation Consortium)ZNF227 (select the gene name)
Genetic variants : HAPMAP7770
Genomic Variants (DGV)ZNF227 [DGVbeta]
DECIPHERZNF227 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF227 
Mutations
ICGC Data PortalZNF227 
TCGA Data PortalZNF227 
Broad Tumor PortalZNF227
OASIS PortalZNF227 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF227  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF227
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF227
DgiDB (Drug Gene Interaction Database)ZNF227
DoCM (Curated mutations)ZNF227 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF227 (select a term)
intoGenZNF227
Cancer3DZNF227(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF227
Genetic Testing Registry ZNF227
NextProtQ86WZ6 [Medical]
TSGene7770
GENETestsZNF227
Target ValidationZNF227
Huge Navigator ZNF227 [HugePedia]
snp3D : Map Gene to Disease7770
BioCentury BCIQZNF227
ClinGenZNF227
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7770
Chemical/Pharm GKB GenePA37599
Clinical trialZNF227
Miscellaneous
canSAR (ICR)ZNF227 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF227
EVEXZNF227
GoPubMedZNF227
iHOPZNF227
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:03 CEST 2017

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