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ZNF229 (zinc finger protein 229)

Identity

Other alias-
HGNC (Hugo) ZNF229
LocusID (NCBI) 7772
Atlas_Id 76040
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44426251 and ends at 44448578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF229 (19q13.31) / ERCC1 (19q13.32)ZNF229 (19q13.31) / ZFP28 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF229   13022
Cards
Entrez_Gene (NCBI)ZNF229  7772  zinc finger protein 229
Aliases
GeneCards (Weizmann)ZNF229
Ensembl hg19 (Hinxton)ENSG00000278318 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278318 [Gene_View]  chr19:44426251-44448578 [Contig_View]  ZNF229 [Vega]
ICGC DataPortalENSG00000278318
TCGA cBioPortalZNF229
AceView (NCBI)ZNF229
Genatlas (Paris)ZNF229
WikiGenes7772
SOURCE (Princeton)ZNF229
Genetics Home Reference (NIH)ZNF229
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF229  -     chr19:44426251-44448578 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF229  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF229 - 19q13.31 [CytoView hg19]  ZNF229 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF229 [Mapview hg19]  ZNF229 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209357 AF192979 AK091541 AY166791 BC150612
RefSeq transcript (Entrez)NM_001278510 NM_014518
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF229
Cluster EST : UnigeneHs.709348 [ NCBI ]
CGAP (NCI)Hs.709348
Alternative Splicing GalleryENSG00000278318
Gene ExpressionZNF229 [ NCBI-GEO ]   ZNF229 [ EBI - ARRAY_EXPRESS ]   ZNF229 [ SEEK ]   ZNF229 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF229 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7772
GTEX Portal (Tissue expression)ZNF229
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJW7
Splice isoforms : SwissVarQ9UJW7
PhosPhoSitePlusQ9UJW7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF229
DMDM Disease mutations7772
Blocks (Seattle)ZNF229
SuperfamilyQ9UJW7
Human Protein AtlasENSG00000278318
Peptide AtlasQ9UJW7
HPRD18324
IPIIPI00798156   IPI00300822   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJW7
IntAct (EBI)Q9UJW7
FunCoupENSG00000278318
BioGRIDZNF229
STRING (EMBL)ZNF229
ZODIACZNF229
Ontologies - Pathways
QuickGOQ9UJW7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF229
Atlas of Cancer Signalling NetworkZNF229
Wikipedia pathwaysZNF229
Orthology - Evolution
OrthoDB7772
GeneTree (enSembl)ENSG00000278318
Phylogenetic Trees/Animal Genes : TreeFamZNF229
HOVERGENQ9UJW7
HOGENOMQ9UJW7
Homologs : HomoloGeneZNF229
Homology/Alignments : Family Browser (UCSC)ZNF229
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF229 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF229
dbVarZNF229
ClinVarZNF229
1000_GenomesZNF229 
Exome Variant ServerZNF229
ExAC (Exome Aggregation Consortium)ZNF229 (select the gene name)
Genetic variants : HAPMAP7772
Genomic Variants (DGV)ZNF229 [DGVbeta]
DECIPHERZNF229 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF229 
Mutations
ICGC Data PortalZNF229 
TCGA Data PortalZNF229 
Broad Tumor PortalZNF229
OASIS PortalZNF229 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF229  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF229
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF229
DgiDB (Drug Gene Interaction Database)ZNF229
DoCM (Curated mutations)ZNF229 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF229 (select a term)
intoGenZNF229
Cancer3DZNF229(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF229
Genetic Testing Registry ZNF229
NextProtQ9UJW7 [Medical]
TSGene7772
GENETestsZNF229
Target ValidationZNF229
Huge Navigator ZNF229 [HugePedia]
snp3D : Map Gene to Disease7772
BioCentury BCIQZNF229
ClinGenZNF229
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7772
Chemical/Pharm GKB GenePA37601
Clinical trialZNF229
Miscellaneous
canSAR (ICR)ZNF229 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF229
EVEXZNF229
GoPubMedZNF229
iHOPZNF229
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:30 CEST 2017

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