Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF23 (zinc finger protein 23)

Identity

Alias_namesZNF359
zinc finger protein 359
Alias_symbol (synonym)KOX16
Zfp612
ZNF612
Other alias
HGNC (Hugo) ZNF23
LocusID (NCBI) 7571
Atlas_Id 47653
Location 16q22.2  [Link to chromosome band 16q22]
Location_base_pair Starts at 71481503 and ends at 71496155 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MCMBP (10q26.11) / ZNF23 (16q22.2)MCMBP 10q26.11 / ZNF23 16q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF23   13023
Cards
Entrez_Gene (NCBI)ZNF23  7571  zinc finger protein 23
AliasesKOX16; ZNF359; ZNF612; Zfp612
GeneCards (Weizmann)ZNF23
Ensembl hg19 (Hinxton)ENSG00000167377 [Gene_View]  chr16:71481503-71496155 [Contig_View]  ZNF23 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167377 [Gene_View]  chr16:71481503-71496155 [Contig_View]  ZNF23 [Vega]
ICGC DataPortalENSG00000167377
TCGA cBioPortalZNF23
AceView (NCBI)ZNF23
Genatlas (Paris)ZNF23
WikiGenes7571
SOURCE (Princeton)ZNF23
Genetics Home Reference (NIH)ZNF23
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF23  -     chr16:71481503-71496155 -  16q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF23  -     16q22.2   [Description]    (hg38-Dec_2013)
EnsemblZNF23 - 16q22.2 [CytoView hg19]  ZNF23 - 16q22.2 [CytoView hg38]
Mapping of homologs : NCBIZNF23 [Mapview hg19]  ZNF23 [Mapview hg38]
OMIM194527   
Gene and transcription
Genbank (Entrez)AF024709 AF226996 AF507946 AK091039 AK297130
RefSeq transcript (Entrez)NM_001304492 NM_001304493 NM_001304494 NM_145911
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)ZNF23
Cluster EST : UnigeneHs.656643 [ NCBI ]
CGAP (NCI)Hs.656643
Alternative Splicing GalleryENSG00000167377
Gene ExpressionZNF23 [ NCBI-GEO ]   ZNF23 [ EBI - ARRAY_EXPRESS ]   ZNF23 [ SEEK ]   ZNF23 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7571
GTEX Portal (Tissue expression)ZNF23
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17027   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17027  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17027
Splice isoforms : SwissVarP17027
PhosPhoSitePlusP17027
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF23
DMDM Disease mutations7571
Blocks (Seattle)ZNF23
SuperfamilyP17027
Human Protein AtlasENSG00000167377
Peptide AtlasP17027
HPRD01915
IPIIPI00012365   IPI00942887   IPI00335885   IPI00643428   
Protein Interaction databases
DIP (DOE-UCLA)P17027
IntAct (EBI)P17027
FunCoupENSG00000167377
BioGRIDZNF23
STRING (EMBL)ZNF23
ZODIACZNF23
Ontologies - Pathways
QuickGOP17027
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF23
Atlas of Cancer Signalling NetworkZNF23
Wikipedia pathwaysZNF23
Orthology - Evolution
OrthoDB7571
GeneTree (enSembl)ENSG00000167377
Phylogenetic Trees/Animal Genes : TreeFamZNF23
HOVERGENP17027
HOGENOMP17027
Homologs : HomoloGeneZNF23
Homology/Alignments : Family Browser (UCSC)ZNF23
Gene fusions - Rearrangements
Fusion : MitelmanMCMBP/ZNF23 [10q26.11/16q22.2]  [t(10;16)(q26;q22)]  
Fusion: TCGAMCMBP 10q26.11 ZNF23 16q22.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF23
dbVarZNF23
ClinVarZNF23
1000_GenomesZNF23 
Exome Variant ServerZNF23
ExAC (Exome Aggregation Consortium)ZNF23 (select the gene name)
Genetic variants : HAPMAP7571
Genomic Variants (DGV)ZNF23 [DGVbeta]
DECIPHER (Syndromes)16:71481503-71496155  ENSG00000167377
CONAN: Copy Number AnalysisZNF23 
Mutations
ICGC Data PortalZNF23 
TCGA Data PortalZNF23 
Broad Tumor PortalZNF23
OASIS PortalZNF23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF23
DgiDB (Drug Gene Interaction Database)ZNF23
DoCM (Curated mutations)ZNF23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF23 (select a term)
intoGenZNF23
Cancer3DZNF23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194527   
Orphanet
MedgenZNF23
Genetic Testing Registry ZNF23
NextProtP17027 [Medical]
TSGene7571
GENETestsZNF23
Huge Navigator ZNF23 [HugePedia]
snp3D : Map Gene to Disease7571
BioCentury BCIQZNF23
ClinGenZNF23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7571
Chemical/Pharm GKB GenePA37602
Clinical trialZNF23
Miscellaneous
canSAR (ICR)ZNF23 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF23
EVEXZNF23
GoPubMedZNF23
iHOPZNF23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:41 CEST 2017

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