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ZNF230 (zinc finger protein 230)

Identity

Alias_symbol (synonym)FDZF2
Other alias
HGNC (Hugo) ZNF230
LocusID (NCBI) 7773
Atlas_Id 76041
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44002925 and ends at 44013920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF230   13024
Cards
Entrez_Gene (NCBI)ZNF230  7773  zinc finger protein 230
AliasesFDZF2
GeneCards (Weizmann)ZNF230
Ensembl hg19 (Hinxton)ENSG00000159882 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159882 [Gene_View]  chr19:44002925-44013920 [Contig_View]  ZNF230 [Vega]
ICGC DataPortalENSG00000159882
TCGA cBioPortalZNF230
AceView (NCBI)ZNF230
Genatlas (Paris)ZNF230
WikiGenes7773
SOURCE (Princeton)ZNF230
Genetics Home Reference (NIH)ZNF230
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF230  -     chr19:44002925-44013920 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF230  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF230 - 19q13.31 [CytoView hg19]  ZNF230 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF230 [Mapview hg19]  ZNF230 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF024701 AK056865 BC030810 BC050340 BC066950
RefSeq transcript (Entrez)NM_006300
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF230
Cluster EST : UnigeneHs.193583 [ NCBI ]
CGAP (NCI)Hs.193583
Alternative Splicing GalleryENSG00000159882
Gene ExpressionZNF230 [ NCBI-GEO ]   ZNF230 [ EBI - ARRAY_EXPRESS ]   ZNF230 [ SEEK ]   ZNF230 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF230 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7773
GTEX Portal (Tissue expression)ZNF230
Human Protein AtlasENSG00000159882-ZNF230 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UIE0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UIE0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UIE0
Splice isoforms : SwissVarQ9UIE0
PhosPhoSitePlusQ9UIE0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF230
DMDM Disease mutations7773
Blocks (Seattle)ZNF230
SuperfamilyQ9UIE0
Human Protein Atlas [tissue]ENSG00000159882-ZNF230 [tissue]
Peptide AtlasQ9UIE0
HPRD15754
IPIIPI00006278   
Protein Interaction databases
DIP (DOE-UCLA)Q9UIE0
IntAct (EBI)Q9UIE0
FunCoupENSG00000159882
BioGRIDZNF230
STRING (EMBL)ZNF230
ZODIACZNF230
Ontologies - Pathways
QuickGOQ9UIE0
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF230
Atlas of Cancer Signalling NetworkZNF230
Wikipedia pathwaysZNF230
Orthology - Evolution
OrthoDB7773
GeneTree (enSembl)ENSG00000159882
Phylogenetic Trees/Animal Genes : TreeFamZNF230
HOVERGENQ9UIE0
HOGENOMQ9UIE0
Homologs : HomoloGeneZNF230
Homology/Alignments : Family Browser (UCSC)ZNF230
Gene fusions - Rearrangements
Tumor Fusion PortalZNF230
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF230 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF230
dbVarZNF230
ClinVarZNF230
1000_GenomesZNF230 
Exome Variant ServerZNF230
ExAC (Exome Aggregation Consortium)ENSG00000159882
GNOMAD BrowserENSG00000159882
Genetic variants : HAPMAP7773
Genomic Variants (DGV)ZNF230 [DGVbeta]
DECIPHERZNF230 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF230 
Mutations
ICGC Data PortalZNF230 
TCGA Data PortalZNF230 
Broad Tumor PortalZNF230
OASIS PortalZNF230 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF230  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF230
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF230
DgiDB (Drug Gene Interaction Database)ZNF230
DoCM (Curated mutations)ZNF230 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF230 (select a term)
intoGenZNF230
Cancer3DZNF230(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF230
MedgenZNF230
Genetic Testing Registry ZNF230
NextProtQ9UIE0 [Medical]
TSGene7773
GENETestsZNF230
Target ValidationZNF230
Huge Navigator ZNF230 [HugePedia]
snp3D : Map Gene to Disease7773
BioCentury BCIQZNF230
ClinGenZNF230
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7773
Chemical/Pharm GKB GenePA37603
Clinical trialZNF230
Miscellaneous
canSAR (ICR)ZNF230 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF230
EVEXZNF230
GoPubMedZNF230
iHOPZNF230
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:40:27 CET 2017

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