Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF232 (zinc finger protein 232)

Identity

Alias_symbol (synonym)ZSCAN11
Other alias
HGNC (Hugo) ZNF232
LocusID (NCBI) 7775
Atlas_Id 76042
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 5105734 and ends at 5112274 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF232 (17p13.2) / DDX39B (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF232   13026
Cards
Entrez_Gene (NCBI)ZNF232  7775  zinc finger protein 232
AliasesZSCAN11
GeneCards (Weizmann)ZNF232
Ensembl hg19 (Hinxton)ENSG00000167840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167840 [Gene_View]  chr17:5105734-5112274 [Contig_View]  ZNF232 [Vega]
ICGC DataPortalENSG00000167840
TCGA cBioPortalZNF232
AceView (NCBI)ZNF232
Genatlas (Paris)ZNF232
WikiGenes7775
SOURCE (Princeton)ZNF232
Genetics Home Reference (NIH)ZNF232
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF232  -     chr17:5105734-5112274 -  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF232  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF232 - 17p13.2 [CytoView hg19]  ZNF232 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF232 [Mapview hg19]  ZNF232 [Mapview hg38]
OMIM616463   
Gene and transcription
Genbank (Entrez)AK057506 AK225622 AK297835 AK298190 AK316369
RefSeq transcript (Entrez)NM_001320952 NM_001320953 NM_001320954 NM_001320955 NM_014519
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF232
Cluster EST : UnigeneHs.279914 [ NCBI ]
CGAP (NCI)Hs.279914
Alternative Splicing GalleryENSG00000167840
Gene ExpressionZNF232 [ NCBI-GEO ]   ZNF232 [ EBI - ARRAY_EXPRESS ]   ZNF232 [ SEEK ]   ZNF232 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF232 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7775
GTEX Portal (Tissue expression)ZNF232
Human Protein AtlasENSG00000167840-ZNF232 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UNY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UNY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UNY5
Splice isoforms : SwissVarQ9UNY5
PhosPhoSitePlusQ9UNY5
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF232
DMDM Disease mutations7775
Blocks (Seattle)ZNF232
SuperfamilyQ9UNY5
Human Protein Atlas [tissue]ENSG00000167840-ZNF232 [tissue]
Peptide AtlasQ9UNY5
HPRD15755
IPIIPI00220290   IPI00902848   IPI00009478   
Protein Interaction databases
DIP (DOE-UCLA)Q9UNY5
IntAct (EBI)Q9UNY5
FunCoupENSG00000167840
BioGRIDZNF232
STRING (EMBL)ZNF232
ZODIACZNF232
Ontologies - Pathways
QuickGOQ9UNY5
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  intracellular membrane-bounded organelle  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  intracellular membrane-bounded organelle  metal ion binding  
NDEx NetworkZNF232
Atlas of Cancer Signalling NetworkZNF232
Wikipedia pathwaysZNF232
Orthology - Evolution
OrthoDB7775
GeneTree (enSembl)ENSG00000167840
Phylogenetic Trees/Animal Genes : TreeFamZNF232
HOVERGENQ9UNY5
HOGENOMQ9UNY5
Homologs : HomoloGeneZNF232
Homology/Alignments : Family Browser (UCSC)ZNF232
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF232
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF232 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF232
dbVarZNF232
ClinVarZNF232
1000_GenomesZNF232 
Exome Variant ServerZNF232
ExAC (Exome Aggregation Consortium)ENSG00000167840
GNOMAD BrowserENSG00000167840
Genetic variants : HAPMAP7775
Genomic Variants (DGV)ZNF232 [DGVbeta]
DECIPHERZNF232 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF232 
Mutations
ICGC Data PortalZNF232 
TCGA Data PortalZNF232 
Broad Tumor PortalZNF232
OASIS PortalZNF232 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF232  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF232
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF232
DgiDB (Drug Gene Interaction Database)ZNF232
DoCM (Curated mutations)ZNF232 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF232 (select a term)
intoGenZNF232
Cancer3DZNF232(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616463   
Orphanet
MedgenZNF232
Genetic Testing Registry ZNF232
NextProtQ9UNY5 [Medical]
TSGene7775
GENETestsZNF232
Target ValidationZNF232
Huge Navigator ZNF232 [HugePedia]
snp3D : Map Gene to Disease7775
BioCentury BCIQZNF232
ClinGenZNF232
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7775
Chemical/Pharm GKB GenePA37604
Clinical trialZNF232
Miscellaneous
canSAR (ICR)ZNF232 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF232
EVEXZNF232
GoPubMedZNF232
iHOPZNF232
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:36:46 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.