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ZNF233 (zinc finger protein 233)

Identity

Alias_symbol (synonym)FLJ38032
Other alias-
HGNC (Hugo) ZNF233
LocusID (NCBI) 353355
Atlas_Id 76043
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44259880 and ends at 44275317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PPP1R12C (19q13.42) / ZNF233 (19q13.31)SNUPN (15q24.2) / ZNF233 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF233   30946
Cards
Entrez_Gene (NCBI)ZNF233  353355  zinc finger protein 233
Aliases
GeneCards (Weizmann)ZNF233
Ensembl hg19 (Hinxton)ENSG00000159915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159915 [Gene_View]  chr19:44259880-44275317 [Contig_View]  ZNF233 [Vega]
ICGC DataPortalENSG00000159915
TCGA cBioPortalZNF233
AceView (NCBI)ZNF233
Genatlas (Paris)ZNF233
WikiGenes353355
SOURCE (Princeton)ZNF233
Genetics Home Reference (NIH)ZNF233
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF233  -     chr19:44259880-44275317 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF233  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF233 - 19q13.31 [CytoView hg19]  ZNF233 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF233 [Mapview hg19]  ZNF233 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055310 AK095351 AY166792 BC047795 BC136734
RefSeq transcript (Entrez)NM_001207005 NM_001330529 NM_181756
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF233
Cluster EST : UnigeneHs.466891 [ NCBI ]
CGAP (NCI)Hs.466891
Alternative Splicing GalleryENSG00000159915
Gene ExpressionZNF233 [ NCBI-GEO ]   ZNF233 [ EBI - ARRAY_EXPRESS ]   ZNF233 [ SEEK ]   ZNF233 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF233 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353355
GTEX Portal (Tissue expression)ZNF233
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NK53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NK53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NK53
Splice isoforms : SwissVarA6NK53
PhosPhoSitePlusA6NK53
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF233
DMDM Disease mutations353355
Blocks (Seattle)ZNF233
SuperfamilyA6NK53
Human Protein AtlasENSG00000159915
Peptide AtlasA6NK53
HPRD15756
IPIIPI00479597   IPI00031183   IPI00855963   IPI01010151   
Protein Interaction databases
DIP (DOE-UCLA)A6NK53
IntAct (EBI)A6NK53
FunCoupENSG00000159915
BioGRIDZNF233
STRING (EMBL)ZNF233
ZODIACZNF233
Ontologies - Pathways
QuickGOA6NK53
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF233
Atlas of Cancer Signalling NetworkZNF233
Wikipedia pathwaysZNF233
Orthology - Evolution
OrthoDB353355
GeneTree (enSembl)ENSG00000159915
Phylogenetic Trees/Animal Genes : TreeFamZNF233
HOVERGENA6NK53
HOGENOMA6NK53
Homologs : HomoloGeneZNF233
Homology/Alignments : Family Browser (UCSC)ZNF233
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF233 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF233
dbVarZNF233
ClinVarZNF233
1000_GenomesZNF233 
Exome Variant ServerZNF233
ExAC (Exome Aggregation Consortium)ZNF233 (select the gene name)
Genetic variants : HAPMAP353355
Genomic Variants (DGV)ZNF233 [DGVbeta]
DECIPHERZNF233 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF233 
Mutations
ICGC Data PortalZNF233 
TCGA Data PortalZNF233 
Broad Tumor PortalZNF233
OASIS PortalZNF233 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF233  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF233
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF233
DgiDB (Drug Gene Interaction Database)ZNF233
DoCM (Curated mutations)ZNF233 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF233 (select a term)
intoGenZNF233
Cancer3DZNF233(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF233
Genetic Testing Registry ZNF233
NextProtA6NK53 [Medical]
TSGene353355
GENETestsZNF233
Target ValidationZNF233
Huge Navigator ZNF233 [HugePedia]
snp3D : Map Gene to Disease353355
BioCentury BCIQZNF233
ClinGenZNF233
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353355
Chemical/Pharm GKB GenePA134917179
Clinical trialZNF233
Miscellaneous
canSAR (ICR)ZNF233 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF233
EVEXZNF233
GoPubMedZNF233
iHOPZNF233
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:04 CEST 2017

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