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ZNF235 (zinc finger protein 235)

Identity

Alias_namesZNF270
ZFP93
zinc finger protein homologous to Zfp93 in mouse
Alias_symbol (synonym)HZF6
ANF270
Other alias
HGNC (Hugo) ZNF235
LocusID (NCBI) 9310
Atlas_Id 76045
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44286348 and ends at 44305025 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF235   12866
Cards
Entrez_Gene (NCBI)ZNF235  9310  zinc finger protein 235
AliasesANF270; HZF6; ZFP93; ZNF270
GeneCards (Weizmann)ZNF235
Ensembl hg19 (Hinxton)ENSG00000159917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159917 [Gene_View]  chr19:44286348-44305025 [Contig_View]  ZNF235 [Vega]
ICGC DataPortalENSG00000159917
TCGA cBioPortalZNF235
AceView (NCBI)ZNF235
Genatlas (Paris)ZNF235
WikiGenes9310
SOURCE (Princeton)ZNF235
Genetics Home Reference (NIH)ZNF235
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF235  -     chr19:44286348-44305025 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF235  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF235 - 19q13.31 [CytoView hg19]  ZNF235 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF235 [Mapview hg19]  ZNF235 [Mapview hg38]
OMIM604749   
Gene and transcription
Genbank (Entrez)AH007320 AH007320 AK226126 AK300317 AK307103
RefSeq transcript (Entrez)NM_004234
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF235
Cluster EST : UnigeneHs.724032 [ NCBI ]
CGAP (NCI)Hs.724032
Alternative Splicing GalleryENSG00000159917
Gene ExpressionZNF235 [ NCBI-GEO ]   ZNF235 [ EBI - ARRAY_EXPRESS ]   ZNF235 [ SEEK ]   ZNF235 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF235 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9310
GTEX Portal (Tissue expression)ZNF235
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14590   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14590  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14590
Splice isoforms : SwissVarQ14590
PhosPhoSitePlusQ14590
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF235
DMDM Disease mutations9310
Blocks (Seattle)ZNF235
SuperfamilyQ14590
Human Protein AtlasENSG00000159917
Peptide AtlasQ14590
HPRD05299
IPIIPI00815811   IPI00003503   IPI00871970   IPI01013370   IPI00477853   
Protein Interaction databases
DIP (DOE-UCLA)Q14590
IntAct (EBI)Q14590
FunCoupENSG00000159917
BioGRIDZNF235
STRING (EMBL)ZNF235
ZODIACZNF235
Ontologies - Pathways
QuickGOQ14590
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF235
Atlas of Cancer Signalling NetworkZNF235
Wikipedia pathwaysZNF235
Orthology - Evolution
OrthoDB9310
GeneTree (enSembl)ENSG00000159917
Phylogenetic Trees/Animal Genes : TreeFamZNF235
HOVERGENQ14590
HOGENOMQ14590
Homologs : HomoloGeneZNF235
Homology/Alignments : Family Browser (UCSC)ZNF235
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF235 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF235
dbVarZNF235
ClinVarZNF235
1000_GenomesZNF235 
Exome Variant ServerZNF235
ExAC (Exome Aggregation Consortium)ZNF235 (select the gene name)
Genetic variants : HAPMAP9310
Genomic Variants (DGV)ZNF235 [DGVbeta]
DECIPHERZNF235 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF235 
Mutations
ICGC Data PortalZNF235 
TCGA Data PortalZNF235 
Broad Tumor PortalZNF235
OASIS PortalZNF235 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF235  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF235
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF235
DgiDB (Drug Gene Interaction Database)ZNF235
DoCM (Curated mutations)ZNF235 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF235 (select a term)
intoGenZNF235
Cancer3DZNF235(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604749   
Orphanet
MedgenZNF235
Genetic Testing Registry ZNF235
NextProtQ14590 [Medical]
TSGene9310
GENETestsZNF235
Target ValidationZNF235
Huge Navigator ZNF235 [HugePedia]
snp3D : Map Gene to Disease9310
BioCentury BCIQZNF235
ClinGenZNF235
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9310
Chemical/Pharm GKB GenePA37455
Clinical trialZNF235
Miscellaneous
canSAR (ICR)ZNF235 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF235
EVEXZNF235
GoPubMedZNF235
iHOPZNF235
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:04 CEST 2017

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