Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF236 (zinc finger protein 236)

Identity

Other aliasZNF236A
ZNF236B
HGNC (Hugo) ZNF236
LocusID (NCBI) 7776
Atlas_Id 76046
Location 18q23  [Link to chromosome band 18q23]
Location_base_pair Starts at 76822607 and ends at 76970726 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PTMA (2q37.1) / ZNF236 (18q23)PTPRG (3p14.2) / ZNF236 (18q23)SLC2A12 (6q23.2) / ZNF236 (18q23)
ZNF236 (18q23) / ZNF627 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF236   13028
Cards
Entrez_Gene (NCBI)ZNF236  7776  zinc finger protein 236
AliasesZNF236A; ZNF236B
GeneCards (Weizmann)ZNF236
Ensembl hg19 (Hinxton)ENSG00000130856 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130856 [Gene_View]  chr18:76822607-76970726 [Contig_View]  ZNF236 [Vega]
ICGC DataPortalENSG00000130856
TCGA cBioPortalZNF236
AceView (NCBI)ZNF236
Genatlas (Paris)ZNF236
WikiGenes7776
SOURCE (Princeton)ZNF236
Genetics Home Reference (NIH)ZNF236
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF236  -     chr18:76822607-76970726 +  18q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF236  -     18q23   [Description]    (hg19-Feb_2009)
EnsemblZNF236 - 18q23 [CytoView hg19]  ZNF236 - 18q23 [CytoView hg38]
Mapping of homologs : NCBIZNF236 [Mapview hg19]  ZNF236 [Mapview hg38]
OMIM604760   
Gene and transcription
Genbank (Entrez)AB208834 AF083213 AF085243 AF085244 BC140859
RefSeq transcript (Entrez)NM_001306089 NM_007345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF236
Cluster EST : UnigeneHs.719137 [ NCBI ]
CGAP (NCI)Hs.719137
Alternative Splicing GalleryENSG00000130856
Gene ExpressionZNF236 [ NCBI-GEO ]   ZNF236 [ EBI - ARRAY_EXPRESS ]   ZNF236 [ SEEK ]   ZNF236 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF236 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7776
GTEX Portal (Tissue expression)ZNF236
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL36   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL36  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL36
Splice isoforms : SwissVarQ9UL36
PhosPhoSitePlusQ9UL36
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF236
DMDM Disease mutations7776
Blocks (Seattle)ZNF236
SuperfamilyQ9UL36
Human Protein AtlasENSG00000130856
Peptide AtlasQ9UL36
HPRD05301
IPIIPI00307551   IPI00647893   IPI00007777   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL36
IntAct (EBI)Q9UL36
FunCoupENSG00000130856
BioGRIDZNF236
STRING (EMBL)ZNF236
ZODIACZNF236
Ontologies - Pathways
QuickGOQ9UL36
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  cellular response to glucose stimulus  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  cellular response to glucose stimulus  
NDEx NetworkZNF236
Atlas of Cancer Signalling NetworkZNF236
Wikipedia pathwaysZNF236
Orthology - Evolution
OrthoDB7776
GeneTree (enSembl)ENSG00000130856
Phylogenetic Trees/Animal Genes : TreeFamZNF236
HOVERGENQ9UL36
HOGENOMQ9UL36
Homologs : HomoloGeneZNF236
Homology/Alignments : Family Browser (UCSC)ZNF236
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF236 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF236
dbVarZNF236
ClinVarZNF236
1000_GenomesZNF236 
Exome Variant ServerZNF236
ExAC (Exome Aggregation Consortium)ZNF236 (select the gene name)
Genetic variants : HAPMAP7776
Genomic Variants (DGV)ZNF236 [DGVbeta]
DECIPHERZNF236 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF236 
Mutations
ICGC Data PortalZNF236 
TCGA Data PortalZNF236 
Broad Tumor PortalZNF236
OASIS PortalZNF236 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF236  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF236
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF236
DgiDB (Drug Gene Interaction Database)ZNF236
DoCM (Curated mutations)ZNF236 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF236 (select a term)
intoGenZNF236
Cancer3DZNF236(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604760   
Orphanet
MedgenZNF236
Genetic Testing Registry ZNF236
NextProtQ9UL36 [Medical]
TSGene7776
GENETestsZNF236
Target ValidationZNF236
Huge Navigator ZNF236 [HugePedia]
snp3D : Map Gene to Disease7776
BioCentury BCIQZNF236
ClinGenZNF236
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7776
Chemical/Pharm GKB GenePA37606
Clinical trialZNF236
Miscellaneous
canSAR (ICR)ZNF236 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF236
EVEXZNF236
GoPubMedZNF236
iHOPZNF236
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:05 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.