Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF239 (zinc finger protein 239)

Identity

Alias_symbol (synonym)MOK2
HOK-2
Other alias
HGNC (Hugo) ZNF239
LocusID (NCBI) 8187
Atlas_Id 76047
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 44051793 and ends at 44070065 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RNU12 (22q13.2) / ZNF239 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF239   13031
Cards
Entrez_Gene (NCBI)ZNF239  8187  zinc finger protein 239
AliasesHOK-2; MOK2
GeneCards (Weizmann)ZNF239
Ensembl hg19 (Hinxton)ENSG00000196793 [Gene_View]  chr10:44051793-44070065 [Contig_View]  ZNF239 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196793 [Gene_View]  chr10:44051793-44070065 [Contig_View]  ZNF239 [Vega]
ICGC DataPortalENSG00000196793
TCGA cBioPortalZNF239
AceView (NCBI)ZNF239
Genatlas (Paris)ZNF239
WikiGenes8187
SOURCE (Princeton)ZNF239
Genetics Home Reference (NIH)ZNF239
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF239  -     chr10:44051793-44070065 -  10q11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF239  -     10q11.21   [Description]    (hg38-Dec_2013)
EnsemblZNF239 - 10q11.21 [CytoView hg19]  ZNF239 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF239 [Mapview hg19]  ZNF239 [Mapview hg38]
OMIM601069   
Gene and transcription
Genbank (Entrez)AK292013 BC026030 DA686973 DA937379 EU446741
RefSeq transcript (Entrez)NM_001099282 NM_001099283 NM_001099284 NM_005674
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929371
Consensus coding sequences : CCDS (NCBI)ZNF239
Cluster EST : UnigeneHs.25040 [ NCBI ]
CGAP (NCI)Hs.25040
Alternative Splicing GalleryENSG00000196793
Gene ExpressionZNF239 [ NCBI-GEO ]   ZNF239 [ EBI - ARRAY_EXPRESS ]   ZNF239 [ SEEK ]   ZNF239 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF239 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8187
GTEX Portal (Tissue expression)ZNF239
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16600   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16600  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16600
Splice isoforms : SwissVarQ16600
PhosPhoSitePlusQ16600
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF239
DMDM Disease mutations8187
Blocks (Seattle)ZNF239
SuperfamilyQ16600
Human Protein AtlasENSG00000196793
Peptide AtlasQ16600
HPRD03044
IPIIPI00003337   
Protein Interaction databases
DIP (DOE-UCLA)Q16600
IntAct (EBI)Q16600
FunCoupENSG00000196793
BioGRIDZNF239
STRING (EMBL)ZNF239
ZODIACZNF239
Ontologies - Pathways
QuickGOQ16600
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  RNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  RNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF239
Atlas of Cancer Signalling NetworkZNF239
Wikipedia pathwaysZNF239
Orthology - Evolution
OrthoDB8187
GeneTree (enSembl)ENSG00000196793
Phylogenetic Trees/Animal Genes : TreeFamZNF239
HOVERGENQ16600
HOGENOMQ16600
Homologs : HomoloGeneZNF239
Homology/Alignments : Family Browser (UCSC)ZNF239
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF239 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF239
dbVarZNF239
ClinVarZNF239
1000_GenomesZNF239 
Exome Variant ServerZNF239
ExAC (Exome Aggregation Consortium)ZNF239 (select the gene name)
Genetic variants : HAPMAP8187
Genomic Variants (DGV)ZNF239 [DGVbeta]
DECIPHER (Syndromes)10:44051793-44070065  ENSG00000196793
CONAN: Copy Number AnalysisZNF239 
Mutations
ICGC Data PortalZNF239 
TCGA Data PortalZNF239 
Broad Tumor PortalZNF239
OASIS PortalZNF239 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF239  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF239
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF239
DgiDB (Drug Gene Interaction Database)ZNF239
DoCM (Curated mutations)ZNF239 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF239 (select a term)
intoGenZNF239
Cancer3DZNF239(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601069   
Orphanet
MedgenZNF239
Genetic Testing Registry ZNF239
NextProtQ16600 [Medical]
TSGene8187
GENETestsZNF239
Huge Navigator ZNF239 [HugePedia]
snp3D : Map Gene to Disease8187
BioCentury BCIQZNF239
ClinGenZNF239
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8187
Chemical/Pharm GKB GenePA37609
Clinical trialZNF239
Miscellaneous
canSAR (ICR)ZNF239 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF239
EVEXZNF239
GoPubMedZNF239
iHOPZNF239
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:52:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.