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ZNF239 (zinc finger protein 239)

Identity

Alias (NCBI)HOK-2
MOK2
HGNC (Hugo) ZNF239
HGNC Alias symbMOK2
HOK-2
LocusID (NCBI) 8187
Atlas_Id 76047
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43556345 and ends at 43568459 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNU12 (22q13.2) / ZNF239 (10q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF239   13031
Cards
Entrez_Gene (NCBI)ZNF239    zinc finger protein 239
AliasesHOK-2; MOK2
GeneCards (Weizmann)ZNF239
Ensembl hg19 (Hinxton)ENSG00000196793 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196793 [Gene_View]  ENSG00000196793 [Sequence]  chr10:43556345-43568459 [Contig_View]  ZNF239 [Vega]
ICGC DataPortalENSG00000196793
TCGA cBioPortalZNF239
AceView (NCBI)ZNF239
Genatlas (Paris)ZNF239
SOURCE (Princeton)ZNF239
Genetics Home Reference (NIH)ZNF239
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF239  -     chr10:43556345-43568459 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF239  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathZNF239 - 10q11.21 [CytoView hg19]  ZNF239 - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000196793
Genome Data Viewer NCBIZNF239 [Mapview hg19]  
OMIM601069   
Gene and transcription
Genbank (Entrez)AK292013 BC026030 CK820210 DA597035 DA686973
RefSeq transcript (Entrez)NM_001099282 NM_001099283 NM_001099284 NM_001324347 NM_001324348 NM_001324349 NM_001324350 NM_001324351 NM_001324352 NM_001324353 NM_005674
Consensus coding sequences : CCDS (NCBI)ZNF239
Gene ExpressionZNF239 [ NCBI-GEO ]   ZNF239 [ EBI - ARRAY_EXPRESS ]   ZNF239 [ SEEK ]   ZNF239 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF239 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF239 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8187
GTEX Portal (Tissue expression)ZNF239
Human Protein AtlasENSG00000196793-ZNF239 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16600   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16600  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16600
PhosPhoSitePlusQ16600
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF239
SuperfamilyQ16600
AlphaFold pdb e-kbQ16600   
Human Protein Atlas [tissue]ENSG00000196793-ZNF239 [tissue]
HPRD03044
Protein Interaction databases
DIP (DOE-UCLA)Q16600
IntAct (EBI)Q16600
BioGRIDZNF239
STRING (EMBL)ZNF239
ZODIACZNF239
Ontologies - Pathways
QuickGOQ16600
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  RNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II cis-regulatory region sequence-specific DNA binding  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  DNA binding  RNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF239
Atlas of Cancer Signalling NetworkZNF239
Wikipedia pathwaysZNF239
Orthology - Evolution
OrthoDB8187
GeneTree (enSembl)ENSG00000196793
Phylogenetic Trees/Animal Genes : TreeFamZNF239
Homologs : HomoloGeneZNF239
Homology/Alignments : Family Browser (UCSC)ZNF239
Gene fusions - Rearrangements
Fusion : QuiverZNF239
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF239 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF239
dbVarZNF239
ClinVarZNF239
MonarchZNF239
1000_GenomesZNF239 
Exome Variant ServerZNF239
GNOMAD BrowserENSG00000196793
Varsome BrowserZNF239
ACMGZNF239 variants
VarityQ16600
Genomic Variants (DGV)ZNF239 [DGVbeta]
DECIPHERZNF239 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF239 
Mutations
ICGC Data PortalZNF239 
TCGA Data PortalZNF239 
Broad Tumor PortalZNF239
OASIS PortalZNF239 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF239  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF239
Mutations and Diseases : HGMDZNF239
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF239
DgiDB (Drug Gene Interaction Database)ZNF239
DoCM (Curated mutations)ZNF239
CIViC (Clinical Interpretations of Variants in Cancer)ZNF239
Cancer3DZNF239
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601069   
Orphanet
DisGeNETZNF239
MedgenZNF239
Genetic Testing Registry ZNF239
NextProtQ16600 [Medical]
GENETestsZNF239
Target ValidationZNF239
Huge Navigator ZNF239 [HugePedia]
ClinGenZNF239
Clinical trials, drugs, therapy
MyCancerGenomeZNF239
Protein Interactions : CTDZNF239
Pharm GKB GenePA37609
PharosQ16600
Clinical trialZNF239
Miscellaneous
canSAR (ICR)ZNF239
HarmonizomeZNF239
DataMed IndexZNF239
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF239
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:23 CEST 2021

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