Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF24 (zinc finger protein 24)

Identity

Alias_namesZNF191
zinc finger protein 24 (KOX 17)
Alias_symbol (synonym)ZSCAN3
Zfp191
KOX17
Other aliasRSG-A
HGNC (Hugo) ZNF24
LocusID (NCBI) 7572
Atlas_Id 51020
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35332208 and ends at 35344467 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPS4X (Xq13.1) / ZNF24 (18q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF24   13032
Cards
Entrez_Gene (NCBI)ZNF24  7572  zinc finger protein 24
AliasesKOX17; RSG-A; ZNF191; ZSCAN3; 
Zfp191
GeneCards (Weizmann)ZNF24
Ensembl hg19 (Hinxton)ENSG00000172466 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172466 [Gene_View]  ENSG00000172466 [Sequence]  chr18:35332208-35344467 [Contig_View]  ZNF24 [Vega]
ICGC DataPortalENSG00000172466
TCGA cBioPortalZNF24
AceView (NCBI)ZNF24
Genatlas (Paris)ZNF24
WikiGenes7572
SOURCE (Princeton)ZNF24
Genetics Home Reference (NIH)ZNF24
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF24  -     chr18:35332208-35344467 -  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF24  -     18q12.2   [Description]    (hg19-Feb_2009)
EnsemblZNF24 - 18q12.2 [CytoView hg19]  ZNF24 - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIZNF24 [Mapview hg19]  ZNF24 [Mapview hg38]
OMIM194534   
Gene and transcription
Genbank (Entrez)AF038964 AF542097 AK021966 AK291246 BC003566
RefSeq transcript (Entrez)NM_001308123 NM_006965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF24
Cluster EST : UnigeneHs.514802 [ NCBI ]
CGAP (NCI)Hs.514802
Alternative Splicing GalleryENSG00000172466
Gene ExpressionZNF24 [ NCBI-GEO ]   ZNF24 [ EBI - ARRAY_EXPRESS ]   ZNF24 [ SEEK ]   ZNF24 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7572
GTEX Portal (Tissue expression)ZNF24
Human Protein AtlasENSG00000172466-ZNF24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17028   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17028  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17028
Splice isoforms : SwissVarP17028
PhosPhoSitePlusP17028
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF24
DMDM Disease mutations7572
Blocks (Seattle)ZNF24
PDB (SRS)1X6E    3LHR   
PDB (PDBSum)1X6E    3LHR   
PDB (IMB)1X6E    3LHR   
PDB (RSDB)1X6E    3LHR   
Structural Biology KnowledgeBase1X6E    3LHR   
SCOP (Structural Classification of Proteins)1X6E    3LHR   
CATH (Classification of proteins structures)1X6E    3LHR   
SuperfamilyP17028
Human Protein Atlas [tissue]ENSG00000172466-ZNF24 [tissue]
Peptide AtlasP17028
HPRD01921
IPIIPI00306446   IPI00964132   
Protein Interaction databases
DIP (DOE-UCLA)P17028
IntAct (EBI)P17028
FunCoupENSG00000172466
BioGRIDZNF24
STRING (EMBL)ZNF24
ZODIACZNF24
Ontologies - Pathways
QuickGOP17028
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleus  transcription by RNA polymerase II  zinc ion binding  myelination  myelination  sequence-specific DNA binding  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  RNA polymerase II transcription factor activity, sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleus  transcription by RNA polymerase II  zinc ion binding  myelination  myelination  sequence-specific DNA binding  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  positive regulation of transcription by RNA polymerase II  
NDEx NetworkZNF24
Atlas of Cancer Signalling NetworkZNF24
Wikipedia pathwaysZNF24
Orthology - Evolution
OrthoDB7572
GeneTree (enSembl)ENSG00000172466
Phylogenetic Trees/Animal Genes : TreeFamZNF24
HOVERGENP17028
HOGENOMP17028
Homologs : HomoloGeneZNF24
Homology/Alignments : Family Browser (UCSC)ZNF24
Gene fusions - Rearrangements
Fusion : QuiverZNF24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF24
dbVarZNF24
ClinVarZNF24
1000_GenomesZNF24 
Exome Variant ServerZNF24
ExAC (Exome Aggregation Consortium)ENSG00000172466
GNOMAD BrowserENSG00000172466
Varsome BrowserZNF24
Genetic variants : HAPMAP7572
Genomic Variants (DGV)ZNF24 [DGVbeta]
DECIPHERZNF24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF24 
Mutations
ICGC Data PortalZNF24 
TCGA Data PortalZNF24 
Broad Tumor PortalZNF24
OASIS PortalZNF24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF24
DgiDB (Drug Gene Interaction Database)ZNF24
DoCM (Curated mutations)ZNF24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF24 (select a term)
intoGenZNF24
Cancer3DZNF24(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194534   
Orphanet
DisGeNETZNF24
MedgenZNF24
Genetic Testing Registry ZNF24
NextProtP17028 [Medical]
TSGene7572
GENETestsZNF24
Target ValidationZNF24
Huge Navigator ZNF24 [HugePedia]
snp3D : Map Gene to Disease7572
BioCentury BCIQZNF24
ClinGenZNF24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7572
Chemical/Pharm GKB GenePA37610
Clinical trialZNF24
Miscellaneous
canSAR (ICR)ZNF24 (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF24
EVEXZNF24
GoPubMedZNF24
iHOPZNF24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 12:02:56 CEST 2018
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