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ZNF25 (zinc finger protein 25)

Identity

Alias_nameszinc finger protein 25 (KOX 19)
Alias_symbol (synonym)KOX19
FLJ31890
Zfp9
Other alias
HGNC (Hugo) ZNF25
LocusID (NCBI) 219749
Atlas_Id 76049
Location 10p11.21  [Link to chromosome band 10p11]
Location_base_pair Starts at 37949572 and ends at 37976655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF25   13043
Cards
Entrez_Gene (NCBI)ZNF25  219749  zinc finger protein 25
AliasesKOX19; Zfp9
GeneCards (Weizmann)ZNF25
Ensembl hg19 (Hinxton)ENSG00000175395 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175395 [Gene_View]  chr10:37949572-37976655 [Contig_View]  ZNF25 [Vega]
ICGC DataPortalENSG00000175395
TCGA cBioPortalZNF25
AceView (NCBI)ZNF25
Genatlas (Paris)ZNF25
WikiGenes219749
SOURCE (Princeton)ZNF25
Genetics Home Reference (NIH)ZNF25
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF25  -     chr10:37949572-37976655 -  10p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF25  -     10p11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF25 - 10p11.21 [CytoView hg19]  ZNF25 - 10p11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF25 [Mapview hg19]  ZNF25 [Mapview hg38]
OMIM194528   
Gene and transcription
Genbank (Entrez)AJ491696 AK056452 AK056635 AK091378 AK122958
RefSeq transcript (Entrez)NM_001329647 NM_001329648 NM_001329649 NM_001329650 NM_001329651 NM_001329652 NM_001329653 NM_001329654 NM_001329655 NM_001329656 NM_001329657 NM_001329658 NM_001329659 NM_001329660 NM_001329661 NM_001329662 NM_001329663 NM_001329664 NM_145011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF25
Cluster EST : UnigeneHs.499429 [ NCBI ]
CGAP (NCI)Hs.499429
Alternative Splicing GalleryENSG00000175395
Gene ExpressionZNF25 [ NCBI-GEO ]   ZNF25 [ EBI - ARRAY_EXPRESS ]   ZNF25 [ SEEK ]   ZNF25 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF25 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219749
GTEX Portal (Tissue expression)ZNF25
Human Protein AtlasENSG00000175395-ZNF25 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17030   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17030  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17030
Splice isoforms : SwissVarP17030
PhosPhoSitePlusP17030
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF25
DMDM Disease mutations219749
Blocks (Seattle)ZNF25
SuperfamilyP17030
Human Protein Atlas [tissue]ENSG00000175395-ZNF25 [tissue]
Peptide AtlasP17030
HPRD01916
IPIIPI00412905   IPI00472052   
Protein Interaction databases
DIP (DOE-UCLA)P17030
IntAct (EBI)P17030
FunCoupENSG00000175395
BioGRIDZNF25
STRING (EMBL)ZNF25
ZODIACZNF25
Ontologies - Pathways
QuickGOP17030
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF25
Atlas of Cancer Signalling NetworkZNF25
Wikipedia pathwaysZNF25
Orthology - Evolution
OrthoDB219749
GeneTree (enSembl)ENSG00000175395
Phylogenetic Trees/Animal Genes : TreeFamZNF25
HOVERGENP17030
HOGENOMP17030
Homologs : HomoloGeneZNF25
Homology/Alignments : Family Browser (UCSC)ZNF25
Gene fusions - Rearrangements
Tumor Fusion PortalZNF25
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF25 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF25
dbVarZNF25
ClinVarZNF25
1000_GenomesZNF25 
Exome Variant ServerZNF25
ExAC (Exome Aggregation Consortium)ENSG00000175395
GNOMAD BrowserENSG00000175395
Genetic variants : HAPMAP219749
Genomic Variants (DGV)ZNF25 [DGVbeta]
DECIPHERZNF25 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF25 
Mutations
ICGC Data PortalZNF25 
TCGA Data PortalZNF25 
Broad Tumor PortalZNF25
OASIS PortalZNF25 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF25  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF25
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF25
DgiDB (Drug Gene Interaction Database)ZNF25
DoCM (Curated mutations)ZNF25 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF25 (select a term)
intoGenZNF25
Cancer3DZNF25(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194528   
Orphanet
DisGeNETZNF25
MedgenZNF25
Genetic Testing Registry ZNF25
NextProtP17030 [Medical]
TSGene219749
GENETestsZNF25
Target ValidationZNF25
Huge Navigator ZNF25 [HugePedia]
snp3D : Map Gene to Disease219749
BioCentury BCIQZNF25
ClinGenZNF25
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219749
Chemical/Pharm GKB GenePA37621
Clinical trialZNF25
Miscellaneous
canSAR (ICR)ZNF25 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF25
EVEXZNF25
GoPubMedZNF25
iHOPZNF25
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:22:45 CET 2017

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