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ZNF250 (zinc finger protein 250)

Identity

Alias_namesZNF647
zinc finger protein 647
Alias_symbol (synonym)MGC9718
ZFP647
Other alias
HGNC (Hugo) ZNF250
LocusID (NCBI) 58500
Atlas_Id 76050
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144876951 and ends at 144901461 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF250   13044
Cards
Entrez_Gene (NCBI)ZNF250  58500  zinc finger protein 250
AliasesZFP647; ZNF647
GeneCards (Weizmann)ZNF250
Ensembl hg19 (Hinxton)ENSG00000196150 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196150 [Gene_View]  chr8:144876951-144901461 [Contig_View]  ZNF250 [Vega]
ICGC DataPortalENSG00000196150
TCGA cBioPortalZNF250
AceView (NCBI)ZNF250
Genatlas (Paris)ZNF250
WikiGenes58500
SOURCE (Princeton)ZNF250
Genetics Home Reference (NIH)ZNF250
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF250  -     chr8:144876951-144901461 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF250  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblZNF250 - 8q24.3 [CytoView hg19]  ZNF250 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF250 [Mapview hg19]  ZNF250 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB208810 AK054888 AK095705 AK294282 BC017091
RefSeq transcript (Entrez)NM_001109689 NM_021061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF250
Cluster EST : UnigeneHs.532277 [ NCBI ]
CGAP (NCI)Hs.532277
Alternative Splicing GalleryENSG00000196150
Gene ExpressionZNF250 [ NCBI-GEO ]   ZNF250 [ EBI - ARRAY_EXPRESS ]   ZNF250 [ SEEK ]   ZNF250 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF250 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58500
GTEX Portal (Tissue expression)ZNF250
Human Protein AtlasENSG00000196150-ZNF250 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP15622   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP15622  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP15622
Splice isoforms : SwissVarP15622
PhosPhoSitePlusP15622
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF250
DMDM Disease mutations58500
Blocks (Seattle)ZNF250
SuperfamilyP15622
Human Protein Atlas [tissue]ENSG00000196150-ZNF250 [tissue]
Peptide AtlasP15622
HPRD15758
IPIIPI00643611   IPI00384807   IPI00982936   IPI00796074   IPI00908973   IPI00884447   IPI00984602   IPI00981096   IPI01009117   
Protein Interaction databases
DIP (DOE-UCLA)P15622
IntAct (EBI)P15622
FunCoupENSG00000196150
BioGRIDZNF250
STRING (EMBL)ZNF250
ZODIACZNF250
Ontologies - Pathways
QuickGOP15622
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF250
Atlas of Cancer Signalling NetworkZNF250
Wikipedia pathwaysZNF250
Orthology - Evolution
OrthoDB58500
GeneTree (enSembl)ENSG00000196150
Phylogenetic Trees/Animal Genes : TreeFamZNF250
HOVERGENP15622
HOGENOMP15622
Homologs : HomoloGeneZNF250
Homology/Alignments : Family Browser (UCSC)ZNF250
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF250
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF250 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF250
dbVarZNF250
ClinVarZNF250
1000_GenomesZNF250 
Exome Variant ServerZNF250
ExAC (Exome Aggregation Consortium)ENSG00000196150
GNOMAD BrowserENSG00000196150
Genetic variants : HAPMAP58500
Genomic Variants (DGV)ZNF250 [DGVbeta]
DECIPHERZNF250 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF250 
Mutations
ICGC Data PortalZNF250 
TCGA Data PortalZNF250 
Broad Tumor PortalZNF250
OASIS PortalZNF250 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF250  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF250
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF250
DgiDB (Drug Gene Interaction Database)ZNF250
DoCM (Curated mutations)ZNF250 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF250 (select a term)
intoGenZNF250
Cancer3DZNF250(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF250
Genetic Testing Registry ZNF250
NextProtP15622 [Medical]
TSGene58500
GENETestsZNF250
Target ValidationZNF250
Huge Navigator ZNF250 [HugePedia]
snp3D : Map Gene to Disease58500
BioCentury BCIQZNF250
ClinGenZNF250
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58500
Chemical/Pharm GKB GenePA37622
Clinical trialZNF250
Miscellaneous
canSAR (ICR)ZNF250 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF250
EVEXZNF250
GoPubMedZNF250
iHOPZNF250
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:36:47 CET 2017

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