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ZNF253 (zinc finger protein 253)

Identity

Alias_namesZNF411
zinc finger protein 411
Alias_symbol (synonym)BMZF-1
FLJ90391
Other aliasBMZF1
HGNC (Hugo) ZNF253
LocusID (NCBI) 56242
Atlas_Id 76054
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19865830 and ends at 19893484 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF253 (19p13.11) / BAZ1A (14q13.1)ZNF253 (19p13.11) / SLC1A6 (19p13.12)ZNF253 BAZ1A
ZNF253 SLC1A6

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF253   13497
Cards
Entrez_Gene (NCBI)ZNF253  56242  zinc finger protein 253
AliasesBMZF-1; BMZF1; ZNF411
GeneCards (Weizmann)ZNF253
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:19865830-19893484 [Contig_View]  ZNF253 [Vega]
TCGA cBioPortalZNF253
AceView (NCBI)ZNF253
Genatlas (Paris)ZNF253
WikiGenes56242
SOURCE (Princeton)ZNF253
Genetics Home Reference (NIH)ZNF253
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF253  -     chr19:19865830-19893484 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF253  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblZNF253 - 19p13.11 [CytoView hg19]  ZNF253 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF253 [Mapview hg19]  ZNF253 [Mapview hg38]
OMIM606954   
Gene and transcription
Genbank (Entrez)AF038951 AK074757 AK074872 BC014148 BC022891
RefSeq transcript (Entrez)NM_001331133 NM_001331134 NM_021047
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF253
Cluster EST : UnigeneHs.301059 [ NCBI ]
CGAP (NCI)Hs.301059
Gene ExpressionZNF253 [ NCBI-GEO ]   ZNF253 [ EBI - ARRAY_EXPRESS ]   ZNF253 [ SEEK ]   ZNF253 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF253 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56242
GTEX Portal (Tissue expression)ZNF253
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75346   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75346  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75346
Splice isoforms : SwissVarO75346
PhosPhoSitePlusO75346
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF253
DMDM Disease mutations56242
Blocks (Seattle)ZNF253
SuperfamilyO75346
Peptide AtlasO75346
HPRD06093
IPIIPI00655840   IPI00929538   
Protein Interaction databases
DIP (DOE-UCLA)O75346
IntAct (EBI)O75346
BioGRIDZNF253
STRING (EMBL)ZNF253
ZODIACZNF253
Ontologies - Pathways
QuickGOO75346
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  negative regulation of transcription, DNA-templated  
NDEx NetworkZNF253
Atlas of Cancer Signalling NetworkZNF253
Wikipedia pathwaysZNF253
Orthology - Evolution
OrthoDB56242
Phylogenetic Trees/Animal Genes : TreeFamZNF253
HOVERGENO75346
HOGENOMO75346
Homologs : HomoloGeneZNF253
Homology/Alignments : Family Browser (UCSC)ZNF253
Gene fusions - Rearrangements
Fusion: TCGAZNF253 BAZ1A
Fusion: TCGAZNF253 SLC1A6
Fusion: Tumor Portal ZNF253
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF253 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF253
dbVarZNF253
ClinVarZNF253
1000_GenomesZNF253 
Exome Variant ServerZNF253
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56242
Genomic Variants (DGV)ZNF253 [DGVbeta]
DECIPHERZNF253 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF253 
Mutations
ICGC Data PortalZNF253 
TCGA Data PortalZNF253 
Broad Tumor PortalZNF253
OASIS PortalZNF253 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF253  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF253
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF253
DgiDB (Drug Gene Interaction Database)ZNF253
DoCM (Curated mutations)ZNF253 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF253 (select a term)
intoGenZNF253
Cancer3DZNF253(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606954   
Orphanet
MedgenZNF253
Genetic Testing Registry ZNF253
NextProtO75346 [Medical]
TSGene56242
GENETestsZNF253
Target ValidationZNF253
Huge Navigator ZNF253 [HugePedia]
snp3D : Map Gene to Disease56242
BioCentury BCIQZNF253
ClinGenZNF253
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56242
Chemical/Pharm GKB GenePA37785
Clinical trialZNF253
Miscellaneous
canSAR (ICR)ZNF253 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF253
EVEXZNF253
GoPubMedZNF253
iHOPZNF253
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:48 CET 2017

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