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ZNF256 (zinc finger protein 256)

Identity

Alias_symbol (synonym)BMZF-3
Other aliasBMZF3
HGNC (Hugo) ZNF256
LocusID (NCBI) 10172
Atlas_Id 56411
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58452201 and ends at 58459077 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF256   13049
Cards
Entrez_Gene (NCBI)ZNF256  10172  zinc finger protein 256
AliasesBMZF-3; BMZF3
GeneCards (Weizmann)ZNF256
Ensembl hg19 (Hinxton)ENSG00000152454 [Gene_View]  chr19:58452201-58459077 [Contig_View]  ZNF256 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152454 [Gene_View]  chr19:58452201-58459077 [Contig_View]  ZNF256 [Vega]
ICGC DataPortalENSG00000152454
TCGA cBioPortalZNF256
AceView (NCBI)ZNF256
Genatlas (Paris)ZNF256
WikiGenes10172
SOURCE (Princeton)ZNF256
Genetics Home Reference (NIH)ZNF256
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF256  -     chr19:58452201-58459077 -  19q13.43   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF256  -     19q13.43   [Description]    (hg38-Dec_2013)
EnsemblZNF256 - 19q13.43 [CytoView hg19]  ZNF256 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF256 [Mapview hg19]  ZNF256 [Mapview hg38]
OMIM606956   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_005773
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF256
Cluster EST : UnigeneHs.596242 [ NCBI ]
CGAP (NCI)Hs.596242
Alternative Splicing GalleryENSG00000152454
Gene ExpressionZNF256 [ NCBI-GEO ]   ZNF256 [ EBI - ARRAY_EXPRESS ]   ZNF256 [ SEEK ]   ZNF256 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF256 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10172
GTEX Portal (Tissue expression)ZNF256
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2P7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2P7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2P7
Splice isoforms : SwissVarQ9Y2P7
PhosPhoSitePlusQ9Y2P7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF256
DMDM Disease mutations10172
Blocks (Seattle)ZNF256
SuperfamilyQ9Y2P7
Human Protein AtlasENSG00000152454
Peptide AtlasQ9Y2P7
HPRD06095
IPIIPI00032392   IPI00941825   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2P7
IntAct (EBI)Q9Y2P7
FunCoupENSG00000152454
BioGRIDZNF256
STRING (EMBL)ZNF256
ZODIACZNF256
Ontologies - Pathways
QuickGOQ9Y2P7
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  multicellular organism development  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  multicellular organism development  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF256
Atlas of Cancer Signalling NetworkZNF256
Wikipedia pathwaysZNF256
Orthology - Evolution
OrthoDB10172
GeneTree (enSembl)ENSG00000152454
Phylogenetic Trees/Animal Genes : TreeFamZNF256
HOVERGENQ9Y2P7
HOGENOMQ9Y2P7
Homologs : HomoloGeneZNF256
Homology/Alignments : Family Browser (UCSC)ZNF256
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF256 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF256
dbVarZNF256
ClinVarZNF256
1000_GenomesZNF256 
Exome Variant ServerZNF256
ExAC (Exome Aggregation Consortium)ZNF256 (select the gene name)
Genetic variants : HAPMAP10172
Genomic Variants (DGV)ZNF256 [DGVbeta]
DECIPHER (Syndromes)19:58452201-58459077  ENSG00000152454
CONAN: Copy Number AnalysisZNF256 
Mutations
ICGC Data PortalZNF256 
TCGA Data PortalZNF256 
Broad Tumor PortalZNF256
OASIS PortalZNF256 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF256  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF256
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF256
DgiDB (Drug Gene Interaction Database)ZNF256
DoCM (Curated mutations)ZNF256 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF256 (select a term)
intoGenZNF256
Cancer3DZNF256(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606956   
Orphanet
MedgenZNF256
Genetic Testing Registry ZNF256
NextProtQ9Y2P7 [Medical]
TSGene10172
GENETestsZNF256
Huge Navigator ZNF256 [HugePedia]
snp3D : Map Gene to Disease10172
BioCentury BCIQZNF256
ClinGenZNF256
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10172
Chemical/Pharm GKB GenePA37627
Clinical trialZNF256
Miscellaneous
canSAR (ICR)ZNF256 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF256
EVEXZNF256
GoPubMedZNF256
iHOPZNF256
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:41 CEST 2017

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