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ZNF26 (zinc finger protein 26)

Identity

Alias_nameszinc finger protein 26 (KOX 20)
Alias_symbol (synonym)KOX20
FLJ20755
Other aliasHEL-179
HGNC (Hugo) ZNF26
LocusID (NCBI) 7574
Atlas_Id 78451
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132986348 and ends at 133012568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RNU11 (1p35.3) / ZNF26 (12q24.33)ZNF26 (12q24.33) / SRRM2 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF26   13053
Cards
Entrez_Gene (NCBI)ZNF26  7574  zinc finger protein 26
AliasesHEL-179; KOX20
GeneCards (Weizmann)ZNF26
Ensembl hg19 (Hinxton)ENSG00000198393 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198393 [Gene_View]  chr12:132986348-133012568 [Contig_View]  ZNF26 [Vega]
ICGC DataPortalENSG00000198393
TCGA cBioPortalZNF26
AceView (NCBI)ZNF26
Genatlas (Paris)ZNF26
WikiGenes7574
SOURCE (Princeton)ZNF26
Genetics Home Reference (NIH)ZNF26
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF26  -     chr12:132986348-133012568 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF26  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblZNF26 - 12q24.33 [CytoView hg19]  ZNF26 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIZNF26 [Mapview hg19]  ZNF26 [Mapview hg38]
OMIM194537   
Gene and transcription
Genbank (Entrez)AK000762 AK122941 AK225296 AK291243 AL833057
RefSeq transcript (Entrez)NM_001256279 NM_001256280 NM_001330513 NM_001330514 NM_019591
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF26
Cluster EST : UnigeneHs.489608 [ NCBI ]
CGAP (NCI)Hs.489608
Alternative Splicing GalleryENSG00000198393
Gene ExpressionZNF26 [ NCBI-GEO ]   ZNF26 [ EBI - ARRAY_EXPRESS ]   ZNF26 [ SEEK ]   ZNF26 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF26 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7574
GTEX Portal (Tissue expression)ZNF26
Human Protein AtlasENSG00000198393-ZNF26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17031   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17031  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17031
Splice isoforms : SwissVarP17031
PhosPhoSitePlusP17031
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF26
DMDM Disease mutations7574
Blocks (Seattle)ZNF26
SuperfamilyP17031
Human Protein Atlas [tissue]ENSG00000198393-ZNF26 [tissue]
Peptide AtlasP17031
HPRD01922
IPIIPI00156521   
Protein Interaction databases
DIP (DOE-UCLA)P17031
IntAct (EBI)P17031
FunCoupENSG00000198393
BioGRIDZNF26
STRING (EMBL)ZNF26
ZODIACZNF26
Ontologies - Pathways
QuickGOP17031
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF26
Atlas of Cancer Signalling NetworkZNF26
Wikipedia pathwaysZNF26
Orthology - Evolution
OrthoDB7574
GeneTree (enSembl)ENSG00000198393
Phylogenetic Trees/Animal Genes : TreeFamZNF26
HOVERGENP17031
HOGENOMP17031
Homologs : HomoloGeneZNF26
Homology/Alignments : Family Browser (UCSC)ZNF26
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF26
dbVarZNF26
ClinVarZNF26
1000_GenomesZNF26 
Exome Variant ServerZNF26
ExAC (Exome Aggregation Consortium)ENSG00000198393
GNOMAD BrowserENSG00000198393
Genetic variants : HAPMAP7574
Genomic Variants (DGV)ZNF26 [DGVbeta]
DECIPHERZNF26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF26 
Mutations
ICGC Data PortalZNF26 
TCGA Data PortalZNF26 
Broad Tumor PortalZNF26
OASIS PortalZNF26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF26  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF26
DgiDB (Drug Gene Interaction Database)ZNF26
DoCM (Curated mutations)ZNF26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF26 (select a term)
intoGenZNF26
Cancer3DZNF26(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194537   
Orphanet
MedgenZNF26
Genetic Testing Registry ZNF26
NextProtP17031 [Medical]
TSGene7574
GENETestsZNF26
Target ValidationZNF26
Huge Navigator ZNF26 [HugePedia]
snp3D : Map Gene to Disease7574
BioCentury BCIQZNF26
ClinGenZNF26
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7574
Chemical/Pharm GKB GenePA37631
Clinical trialZNF26
Miscellaneous
canSAR (ICR)ZNF26 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF26
EVEXZNF26
GoPubMedZNF26
iHOPZNF26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:36:49 CET 2017

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